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Report for CCDS50532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50532.1 Public Mus musculus 2 Ajm1 23 108 98 CCDS HistoryNCBI Gene:381353Re-query CCDS DB by CCDS ID:50532.1Re-query CCDS DB by GeneID:381353See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50532.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114217.2 ENSMUSP00000109855.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114217.2Link to Ensembl Protein Viewer:ENSMUSP00000109855.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114217Re-query CCDS DB by Protein ID:ENSMUSP00000109855
Original member Current member EBI ENSMUST00000191602.1 ENSMUSP00000140109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191602.1Link to Ensembl Protein Viewer:ENSMUSP00000140109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191602Re-query CCDS DB by Protein ID:ENSMUSP00000140109
Original member Current member EBI ENSMUST00000188161.1 ENSMUSP00000140763.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188161.1Link to Ensembl Protein Viewer:ENSMUSP00000140763.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188161Re-query CCDS DB by Protein ID:ENSMUSP00000140763
Original member NCBI NM_001005424.2 NP_001005424.2 Updated not alive Link to Nucleotide Sequence:NM_001005424.2Link to Protein Sequence:NP_001005424.2Re-query CCDS DB by Nucleotide ID:NM_001005424Re-query CCDS DB by Protein ID:NP_001005424
Current member NCBI NM_001005424.3 NP_001005424.2 Accepted alive Link to Nucleotide Sequence:NM_001005424.3Link to Protein Sequence:NP_001005424.2Re-query CCDS DB by Nucleotide ID:NM_001005424Re-query CCDS DB by Protein ID:NP_001005424Link to BLAST:NP_001005424.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005424.2 974 A2AJA9-1 974 100% 0 0

Chromosomal Locations for CCDS 50532.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25576973 25579897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2925 nt):
ATGACCCGCACGGACCCGCCGGACTTGCTGGTGTCGACCGTGTACCAGGACATCAAGGTGGTGGACCCAG
GGCTCACGTCCAAACGCCAGCCATGTGAGCGATCCGTGGCCCGGCCTGCTGCGCCCACGCCTTTCAACAA
GCGCCACTGCCGTAGTTTTGACTTCTTAGAGGCACTGGACGAGCCCACCATGGAGACACACCCAGAGCCG
CCACCTCCTGAACCTGCGCCACCGCGCGCCCGACCCAGAGACAGCGAGCCTCGGCGCCGCACCCGTTCCA
AGAGCGCGCCCCGTGCGTCCCAAGGCCTGGCGACTGCTCCAGCTTCGCCGCCCGTACTGCAACGCAGAGG
TCGGGAAGCCCAGCGTGCAGTGCGGGTGGAGGGGTCGCCGCGCCGGGAGCCCTCGTATCCTGCGCTGAGA
GCTCTCGCTAATGAGCTGCACCCCATCAAGCTCCAGCCACAGCGGGGAGGCCCCGGACGCATCGCGCCTC
TATGCGCCACCCCAGGCCGCTGCGCACCACCGGAACCACCCTCTGGACCTGTCCCCCATGTCCGCTGCCG
TTTGGACATCAAGCCGGACGAGGCAGTGCTGCAGCACGCCGCCCGAAGCTCGCGATCTTGCGCACCTAGA
GAGACGACGTCCTGGGCTCGCACAGCTCCACAGTTCCATGGCCTCACAGTTCCCGGCCCTCGCCACGTGG
CCCTGTCACGCACTCCTACCCCCAGTGACTTGTACTGTACTGACCCCAGAACTCTGTACTGTGACGGGCC
ACTGCCTGGGCCCCGGGACTACTTGGAGCACCGCAGTCAACCCTTCACAACGCCTCCAGGTCCCACCCAA
TTCTTCTACACCGAGGAGCCAGAGGGCTACGCAGGCAGCTTTACCACAAGCCCCGGCCTTCCCTTTGATG
GCTACTGTTCCAGGCCCTACTTGTCCGAAGAACCCCCTAGACCCAGTCCAAGGCGTGGGGGCAGCTACTA
TGCTGGCGAAGTACGCACCTTCCCGATCCAGGAGCCCCCCTCCCGCTCCTACTACGGGGAGACAACTCGA
GCCTACGGTATGCCTTTCGTTCCCCGGTATGTCCCAGAAGAGCCCCGGGCGCACCCTGGAGCCCGCACTT
TCTACACCGAGGACTTTGGGAGGTACCGAGAACGCGATGTACTGGCTCGGACTTACCCGCACCCGCGCAG
CAGCCCACCCTGGGCTGACTGGGGTCCGAGGCCTTACCGCACCCTTCAGGTAATGCCGCCTCCCGCCCCT
GGACCACTGTTGGCCTCGTGGCACGGCGGCACCGGCACAAGCCCACCCCGGCTGGCCACCGATAGCCGCC
ACTACTCTCGATCCTGGGACAACATCCTAGCTCCTGGTCCTCGTCGTGAAGATCCTCTAGGACGCGGCCG
CAGCTATGAGAACCTCCTGGGACGCGAGGTTCGGGATACGAGGGGTTCATCCCCTGAAGGTCGGCGTCCA
CCAGTCGTAGTGAATTTGTCCACCTCACCCAGACGCTATGCAGCACTGTCGCTGTCCGAGACGTCGCTGA
CAGAGAAGGGCCGCGCGGGAGAGAGCCTGGGCCGCAACTGGTACGTCACGCCAGAGATTACCATCACAGA
CAACGACCTGCGCTCAGTGGATCGCCCGACTGCCAAGGGCTGGGAATTGCCTGGAGGCCGACCACGGCAG
CCCGTATCCACGGTCCCTGAGGGTCCTGCTTCAAGCCGCCAGCGCAGCCTCGAGCAGCTGGACGAGCTCA
TCACTGACCTGGTCATCGACTCACGGTCGCCAGCCCAGGCCCCGGAGCCTGCCGCCGAAGGTTTAGGCCG
CCAACTACGCCGCCTGCTGGACTCACGGGCTGCAGGCCCTGGAGGGGCCACCCTGCTGGCGCCATCGCGC
TCGCCCCCGGCCTCGGCTGGCAGCACTGAAGAGCCCACCGGCTCGGGGGAGGCAGCGGACGCCTCCCCCG
AGCCCAGCGCAGACGAGGATGACTTGATGACCTGCTCCAACGCGCGCTGCCGGCGGACAGAGACCATGTT
CAACGCCTGCCTCTACTTCAAGTCGTGCCACAGCTGCTATACCTACTACTGCTCGCGTCTGTGCCGCCGA
GAGGACTGGGACGCGCACAAGGCGCGTTGCGTGTACGGCCGCGTGGGCAGCGTGTGCCGCCACGTGCTGC
AGTTCTGCCGCGACAGCAGCCCAGTGCATCGCGCCTTCTCTCGCATAGCGCGCGTCGGATTCCTGTCGCG
AGGCCGTGGCGTGCTGTTCTTGGGCTTCCCGAGCCCAGGCTCTGCCGACAACTTCCTACGCTTTGGCCTC
GAAGGGTTGCTGTTATCGCCCACCTACCTGTCGCTGCGTGAGCTGGCTACACATGCGGCGCCCCTGGGTA
GCTATGCACGAGAGCTGGCGGCAGCAGGAAGGCTCTATGAGCCGGCAGAGTGCTTCCTGCTTAGCGTGTC
CGTGGCTGTGGGCCCCAGCGCTGCACCCCCCGGAGCCGCTGCCCGGCCCGCGCCGCGCACTCCTGGGCCC
ACGGTGCGCAAGTTCGCCAAGGTGGCTCTGGCCGCTGGCAGCCCGACGCGTCCTCCTCCTGCGCGTGGCG
GAGAGCCAGATATGGAAACCTTGATCCTGACGCCACCCCCAGGTACTGCGGGCCTGGACGAAGAAGGTGA
GGCCGGCCGGCGCGCACGTGAAGTAGCCTTCATCCATATCCAACGTGAGCTTCGAATGCGCGGCGTCTTC
CTCCGCCACGAATTCCCACGGGTCTATGAGCAGCTCTGTGAGTTTGTGGAAGCTAACCGGCGCTTCACGC
CCACAACCATCTATCCCACGGATCGGCGCACTGGCCGCCCCTTCATGTGCATGATCATGGCTGCATCGGA
GCCGCGTGCACTAGATTGGGTAGCCAGCGCCAACCTGCTGGACGACATCATGTGA

Translation (974 aa):
MTRTDPPDLLVSTVYQDIKVVDPGLTSKRQPCERSVARPAAPTPFNKRHCRSFDFLEALDEPTMETHPEP
PPPEPAPPRARPRDSEPRRRTRSKSAPRASQGLATAPASPPVLQRRGREAQRAVRVEGSPRREPSYPALR
ALANELHPIKLQPQRGGPGRIAPLCATPGRCAPPEPPSGPVPHVRCRLDIKPDEAVLQHAARSSRSCAPR
ETTSWARTAPQFHGLTVPGPRHVALSRTPTPSDLYCTDPRTLYCDGPLPGPRDYLEHRSQPFTTPPGPTQ
FFYTEEPEGYAGSFTTSPGLPFDGYCSRPYLSEEPPRPSPRRGGSYYAGEVRTFPIQEPPSRSYYGETTR
AYGMPFVPRYVPEEPRAHPGARTFYTEDFGRYRERDVLARTYPHPRSSPPWADWGPRPYRTLQVMPPPAP
GPLLASWHGGTGTSPPRLATDSRHYSRSWDNILAPGPRREDPLGRGRSYENLLGREVRDTRGSSPEGRRP
PVVVNLSTSPRRYAALSLSETSLTEKGRAGESLGRNWYVTPEITITDNDLRSVDRPTAKGWELPGGRPRQ
PVSTVPEGPASSRQRSLEQLDELITDLVIDSRSPAQAPEPAAEGLGRQLRRLLDSRAAGPGGATLLAPSR
SPPASAGSTEEPTGSGEAADASPEPSADEDDLMTCSNARCRRTETMFNACLYFKSCHSCYTYYCSRLCRR
EDWDAHKARCVYGRVGSVCRHVLQFCRDSSPVHRAFSRIARVGFLSRGRGVLFLGFPSPGSADNFLRFGL
EGLLLSPTYLSLRELATHAAPLGSYARELAAAGRLYEPAECFLLSVSVAVGPSAAPPGAAARPAPRTPGP
TVRKFAKVALAAGSPTRPPPARGGEPDMETLILTPPPGTAGLDEEGEAGRRAREVAFIHIQRELRMRGVF
LRHEFPRVYEQLCEFVEANRRFTPTTIYPTDRRTGRPFMCMIMAASEPRALDWVASANLLDDIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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