NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50531.1 Public Mus musculus 2 Mamdc4 23 108 98 CCDS HistoryNCBI Gene:381352Re-query CCDS DB by CCDS ID:50531.1Re-query CCDS DB by GeneID:381352See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50531.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095117.9 ENSMUSP00000092735.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095117.9Link to Ensembl Protein Viewer:ENSMUSP00000092735.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095117Re-query CCDS DB by Protein ID:ENSMUSP00000092735
Original member Current member NCBI NM_001081199.1 NP_001074668.2 Accepted alive Link to Nucleotide Sequence:NM_001081199.1Link to Protein Sequence:NP_001074668.2Re-query CCDS DB by Nucleotide ID:NM_001081199Re-query CCDS DB by Protein ID:NP_001074668Link to BLAST:NP_001074668.2

Chromosomal Locations for CCDS 50531.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25563307 25563369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25563532 25563707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25564166 25564274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25564352 25564479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25564576 25564710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25564825 25564971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25565096 25565186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25565280 25565398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25565484 25565621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25565711 25565930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25566020 25566156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25566246 25566380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25566452 25566568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25566712 25566823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25566904 25567028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25567127 25567258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25567353 25567481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25567586 25567774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25567859 25567943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25568185 25568358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25568458 25568546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25568630 25568767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25568959 25569084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25569229 25569313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25569386 25569516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25569694 25569819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25569907 25570080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25570157 25570279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25571172 25571217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3699 nt):
ATGTGCCTGCCTAGCCACCTTCTTTCAACCTGGGTCCTGTTTATGGTTACCCTGCCAGCTGCACAGTCGC
TAGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCCCCATCAAAGCTGTATGCAACTTTGTGTGTGACTG
TGGAGACTGTTCAGACGAAACTCAGTGTGGTTTCCATGGAGCCTCAACTATCCCAAGCACCTCCTTCACC
TGCAACTTTGAGCAGGACTCCTGTGGCTGGCAGGACATCAGCACCTCAGGCTATCGATGGCTTCGAGACC
GGGCAGGGGCAGTGCTGCATGGTCCTGGGCCTCATTCTGACCATACACATGGCACTGACTTGGGCTGGTA
TATGGCTGTGGGAACCCACAGTGGGAAGGAGCCATCTACTGCGACTCTGCGTTCTCCTGTCATGCGTGAG
GCAGCCCCTACCTGTGAACTGAGGCTCTGGTACCACATTGCCTCTAGAGATGTCGCTGAGCTGCGGCTGG
ACCTGACCCATGGTGTGGAGACACTGACTCTATGGCAGACCTCAGGACCCTGGGGCCCTGGCTGGCAGGA
GCTGGCAGTGAACACTGGCCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGCCACCCGAAATGCCACA
CACAGGGGCGCTGTGGCCTTGGATGATGTGGAGTTCCGGGACTGTGGGCTACCCATCCCTCAGGCCAGGT
GCCCCCTGGGGCATCACCACTGCCAGAACAAGGCTTGTGTGGAGCCCCACCAGCTCTGTGATGGTGAAGA
CAACTGTGGAGACAGATCTGATGAAGACCCACTCATCTGCAGCCACCACATGGCCACTGACTTTGAGACA
GGCCTGGGACCGTGGAACCAGTTAGAGGGCTGGACCCGGAACCACAGTGCTGGCAGCATGGTGAGCCCTG
CCTGGCCCCACCGAGATCACAGCCGCAACAGTGCATACGGCTTCTTCCTCATCTCTGTGGCCAAGCCTGG
CACCACTGCTGTCCTCTACAGCCCTGAGTTCCAAGGCTCAGTCTCCAACAACTGCTCGTTCACCTTCTAT
TACTACCTGCACGGGTCTGAGGCCAGCCACTTCCAGCTGTTCCTGCAGGCACAGGGGCTCAACACCCCCC
AGGTCCCTGTTCTACTTCGAAGCCGCCATGGAGAACTGGGGACAGCCTGGGTCAGAGACCGGGTTGACAT
TCAAAGTGCCCATCCATTTCGGATCCTTCTAGCTGGGGAGACGGGTCCAGGAGGCGTCGTGGGCCTAGAC
GACCTTATCATGTCTAGCCACTGCATGCTTGTTCCAGCTATGTCCACCCTGCAGTCATCACTTTCTGGAC
CTGTGCCATTAGCCCTCTATCCCCAGACATCCATCAAGCTGCCCCAGCAGACCTGTGAGCCAGGACATCT
CTCCTGTGGTGACCTGTGTGTGCCCCCTGAGCAGCTGTGTGATTTCCAGAAGCACTGTGCAGAGGGCGAG
GATGAACACAAGTGTGGCACCACAGACTTTGAGTCCGCCTCTGCTGGGGGCTGGGAGGACATCAGTGTAG
GGAAGCTGCAGTGGCAATGGGTTGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGCCAATCGGGATGC
TCCTGGGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGCCCGGGCTCTCACACCT
GCTCTGGGCCCCTCTGGCCCTCACTGTGAACTCCACATGGCTTACTATTTTCAAAGTCACCCCCAAGGCT
TCTTGGCACTGGTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGG
GAGCTGGACAGAGGAGAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAGCTGGAGTTTGTCAGTCTG
GTGGACTTGGATGGCCCTGGCCAGCAGGGGGCTGGGGTGGACAATGTGACTCTGAGAGACTGCAACCCCA
TGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCATACAGG
CCACCTCACAGATGCCCACTGGCACCGTATAAAAAGCCACGGCTCTCAGCTTGACCACACAACTGGCCAA
GGCTTTTTCATGTTCTTGGATCCCACGGACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCTCACAAGAC
CTCAGGTGCCAGTTGTCCCCAAGGAATGTCTCAGCTTCTGGTACCGCCTGTATGGGCCCCAGATTGGGAC
ACTGTGCCTGGCCATGAGGAGGGAGCGGGAGGAAGACATACTACTGTGGTCCCGGTCGGGCACCCATGGC
AACCGCTGGCACCAGGCTTGGGTCACTCTTCATCACCAGCCAGAGGCCAGCACCAAGTACCAGTTGCTGT
TTGAAGGCCTCCGGAATGGGTACCATGGCACAATGGCCCTGGATGACATAGCTGTGCGGCCTGGCCCCTG
CTGGGCCCCCAAGAGCTGTTCCTTTGAAGACTCTGACTGTGGCTTCTCCCCAGGGGGCTGGGGTCTGTGG
ACGCACCAGAGTAATGCCTCAGGCCTTGCTTCTTGGGGTCCTTGGATAGACCATACCACAGGGACAGCCC
AAGGGCACTACATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAGGGTCATGTGGCCGCTCTGACTTC
AGAGGAACACCAGCCCCTGTCCCAGCCTGCCTGTCTGACCTTCTGGTACCACATGAGCGTCCCCAATCCA
GGCACCTTGAGGGTCCACGTGGAAGAGAGCACAAGGCGTCAAGAGCTCAGCATCAGTGCCCATGGTAGAT
CTGCCTGGCGCCTGGGCAGCGTCAATGTGCAGGCTGAGCAAGCCTGGAAGGTGGTGTTTGAGGCTGTGGC
TGCTGGTGTAGAATATTCCTACATGGCTCTAGATGACATTTCCCTCCAAGATGGGCCCTGTCCTCAGCCA
GGTTCCTGTGACTTTGAAACTGGCCTGTGTGGGTGGAGCCACCTGCCCTGGCCCAGCCTGGGCGGGTACA
GCTGGGACTGGAGTAGTGGAGCCACCCCATCCCGCTACCCCCAGCCTTCAGTGGACCATACCCTGGGCAC
AGAAGCAGGCCATTTTGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGC
AGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCTTTCCTGAGCATT
TCTACAAGGGTGAGTTGAGAGTGCTCCTGAGCAGTGCCCGAGGCCAGCTAGCTGTGTGGTACCAGGGTGG
GCACTTGCGGGACCAGTGGCTACAAGTCCAGATTGAACTGTCCAACTCTGAGGAGTTCCAGATTGTTTTT
GAAGCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCAGTACCTGGCTGGAC
AACAGTGCAAGCAGCCTTCACCTAGCCAGGGTGAAGTGGCAGCACCCGTGTCTGTGCCAGTTGCCGTTGG
AGGAGCCCTCCTCTTTTTCATGTTCCTGGTGCTCATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCAG
CACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGCGGATC
ATGTTACCCTCCCAGAATCAATCACCAGCAACCCACAGAGCCCTCCAGACCTGGCCTGA

Translation (1232 aa):
MCLPSHLLSTWVLFMVTLPAAQSLGKTWLPNHCRSPIKAVCNFVCDCGDCSDETQCGFHGASTIPSTSFT
CNFEQDSCGWQDISTSGYRWLRDRAGAVLHGPGPHSDHTHGTDLGWYMAVGTHSGKEPSTATLRSPVMRE
AAPTCELRLWYHIASRDVAELRLDLTHGVETLTLWQTSGPWGPGWQELAVNTGRIQGDFKVTFSATRNAT
HRGAVALDDVEFRDCGLPIPQARCPLGHHHCQNKACVEPHQLCDGEDNCGDRSDEDPLICSHHMATDFET
GLGPWNQLEGWTRNHSAGSMVSPAWPHRDHSRNSAYGFFLISVAKPGTTAVLYSPEFQGSVSNNCSFTFY
YYLHGSEASHFQLFLQAQGLNTPQVPVLLRSRHGELGTAWVRDRVDIQSAHPFRILLAGETGPGGVVGLD
DLIMSSHCMLVPAMSTLQSSLSGPVPLALYPQTSIKLPQQTCEPGHLSCGDLCVPPEQLCDFQKHCAEGE
DEHKCGTTDFESASAGGWEDISVGKLQWQWVEAQEKSKPAGDANRDAPGHFLSLQKAWGQLRSEARALTP
ALGPSGPHCELHMAYYFQSHPQGFLALVVVENGFRELLWQAPGGGSGSWTEEKIILGARRRPFQLEFVSL
VDLDGPGQQGAGVDNVTLRDCNPMVTTESDQELSCNFERDSCSWHTGHLTDAHWHRIKSHGSQLDHTTGQ
GFFMFLDPTDPPARGQGALLLTRPQVPVVPKECLSFWYRLYGPQIGTLCLAMRREREEDILLWSRSGTHG
NRWHQAWVTLHHQPEASTKYQLLFEGLRNGYHGTMALDDIAVRPGPCWAPKSCSFEDSDCGFSPGGWGLW
THQSNASGLASWGPWIDHTTGTAQGHYMVVDTSPNVLPKGHVAALTSEEHQPLSQPACLTFWYHMSVPNP
GTLRVHVEESTRRQELSISAHGRSAWRLGSVNVQAEQAWKVVFEAVAAGVEYSYMALDDISLQDGPCPQP
GSCDFETGLCGWSHLPWPSLGGYSWDWSSGATPSRYPQPSVDHTLGTEAGHFAFFETSVLGPGGQAAWLR
SEPLPATTVSCLRFWYYMGFPEHFYKGELRVLLSSARGQLAVWYQGGHLRDQWLQVQIELSNSEEFQIVF
EATLGGQPALGPIAIDDVQYLAGQQCKQPSPSQGEVAAPVSVPVAVGGALLFFMFLVLMGLGGWHWLQKQ
HCPGQRSTDAAASGFANILFNADHVTLPESITSNPQSPPDLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH