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Report for CCDS50526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50526.1 Public Mus musculus 2 Cysrt1 23 108 98 CCDS HistoryNCBI Gene:67859Re-query CCDS DB by CCDS ID:50526.1Re-query CCDS DB by GeneID:67859See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043379.4 ENSMUSP00000045363.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043379.4Link to Ensembl Protein Viewer:ENSMUSP00000045363.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043379Re-query CCDS DB by Protein ID:ENSMUSP00000045363
Original member Current member EBI ENSMUST00000186719.1 ENSMUSP00000140416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186719.1Link to Ensembl Protein Viewer:ENSMUSP00000140416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186719Re-query CCDS DB by Protein ID:ENSMUSP00000140416
Original member NCBI NM_026415.3 NP_080691.2 Updated not alive Link to Nucleotide Sequence:NM_026415.3Link to Protein Sequence:NP_080691.2Re-query CCDS DB by Nucleotide ID:NM_026415Re-query CCDS DB by Protein ID:NP_080691
Current member NCBI NM_026415.4 NP_080691.2 Accepted alive Link to Nucleotide Sequence:NM_026415.4Link to Protein Sequence:NP_080691.2Re-query CCDS DB by Nucleotide ID:NM_026415Re-query CCDS DB by Protein ID:NP_080691Link to BLAST:NP_080691.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080691.2 142 Q9D1E4 142 100% 0 0

Chromosomal Locations for CCDS 50526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25239070 25239498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGACCCCCATGAGATGGTTGTGAAGAATCCATATGCCCACATCAGCATTCCTCGGGCTCACCTGCGCT
CTGACCTGGGGCAGCAGTTAGAGGAGGTTCCTTCTTCATCTTCCTCCTCTGAGACTCAGCCTCTGCCTGC
AGGAACATGTATCCCAGAGCCAGTGGGCCTCTTACAAACTACTGAAGCCCCTGGGCCCAAAGGTATCAAG
GGCATCAAGGGTACTGCTCCTGAGCACGGCCAGCAGACCTGGCAGTCACCCTGCAATCCCTATAGCAGTG
GGCAACGTCCATCGGGACTGACTTATGCTGGCCTGCCACCTGTAGGGCGTGGTGATGACATTGCCCACCA
CTGCTGCTGCTGCCCTTGCTGCTCCTGCTGCCACTGTCCTCGCTTCTGCCGTTGTCACAGCTGTTGTGTT
ATCTCCTAG

Translation (142 aa):
MDPHEMVVKNPYAHISIPRAHLRSDLGQQLEEVPSSSSSSETQPLPAGTCIPEPVGLLQTTEAPGPKGIK
GIKGTAPEHGQQTWQSPCNPYSSGQRPSGLTYAGLPPVGRGDDIAHHCCCCPCCSCCHCPRFCRCHSCCV
IS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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