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Report for CCDS50480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50480.1 Public Mus musculus 19 Shtn1 23 108 98 CCDS HistoryNCBI Gene:71653Re-query CCDS DB by CCDS ID:50480.1Re-query CCDS DB by GeneID:71653See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163821.2 ENSMUSP00000126227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163821.2Link to Ensembl Protein Viewer:ENSMUSP00000126227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163821Re-query CCDS DB by Protein ID:ENSMUSP00000126227
Original member Current member NCBI NM_175172.4 NP_780381.1 Accepted alive Link to Nucleotide Sequence:NM_175172.4Link to Protein Sequence:NP_780381.1Re-query CCDS DB by Nucleotide ID:NM_175172Re-query CCDS DB by Protein ID:NP_780381Link to BLAST:NP_780381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780381.1 456 Q8K2Q9-2 456 100% 0 0

Chromosomal Locations for CCDS 50480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58975197 58975208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58999893 58999946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59003840 59003949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59009765 59009847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59015527 59015626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59018805 59018958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59022176 59022322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59028155 59028249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59032173 59032254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59035044 59035141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59038222 59038390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59041862 59041956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59050834 59050894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59060631 59060683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59075455 59075512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGAACAGCTCGGACGAGGAGAAGCAGCTGCAGCTCATCACCAGCTTGAAGGAGCAAGCCATTGGCGAAT
ATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAGTGTGACAAAATTAGGCAAGAACGAGATGA
AGCTGTTAAAAAACTGGAAGAGTTTCAGAAAATTTCACATATGGTTATAGAGGAGGTGAATTTCATGCAG
AACCATCTTGAAATAGAGAAGACATGTCGAGAGAGCGCTGAAGCCTTGGCGACAAAGCTAAATAAAGAAA
ATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGAT
AAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGT
CAGAAGCAAATCAAAGAACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCG
AGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAGGTAAATAAAGTTAAGCAAGAAAAAGC
TGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGTGTCCATGTTGGCT
GTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTT
TTGCACAAGAGATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCT
TCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGG
ATCCAGCATCAGAAAAAGGTCAAAGAGCTGGAGGAGCGGCTGGAGAATGAAGCACTTCACAAAGAGATCC
ATAACCTCAGACAACAGCTGGAGCTTCTGGAAGACGACAAGAGGGAGCTAGAGCAGAAATACCAGAGCTC
GGAGGAGAAGGCCCGGAACCTGAAGCATTCAGTGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAAT
TCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCGGTCCCTCA
TGTCTATGATCCGGAAGCGATCTCACCCCAGTGGCAATAGTGCTAAGAAAGAAAAGACAACTCAGCCAGA
GACAGCTGAGGAAGTCACAGACCTGAAGAGGCAAGCAGTGGAAGAGATGATGGACAGAATTAAGAAGGGA
GTTCATCTTAGACCGGTTAACCAGACAGCCAGACCCAAGGCAAAGCCAGACTCTCTCAAGGGCTCAGAAA
GTGCGGTGGATGAGCTGAAGGGAATCCTGGCCTCCCAGTAA

Translation (456 aa):
MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISHMVIEEVNFMQ
NHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDDDPATDTDAAAETCVSVQC
QKQIKELRDQIVSVQEEKKVLAIELENLKSKLGEVMEEVNKVKQEKAVLNSEVLEQRKVLEKCNRVSMLA
VEEYEELQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSLPDQQLLKALDENAKLIQQLEEER
IQHQKKVKELEERLENEALHKEIHNLRQQLELLEDDKRELEQKYQSSEEKARNLKHSVDELQKRVNQSEN
SVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGNSAKKEKTTQPETAEEVTDLKRQAVEEMMDRIKKG
VHLRPVNQTARPKAKPDSLKGSESAVDELKGILASQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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