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Report for CCDS50468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50468.1 Public Mus musculus 19 Rbm20 23 108 98 CCDS HistoryNCBI Gene:73713Re-query CCDS DB by CCDS ID:50468.1Re-query CCDS DB by GeneID:73713See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164202.8 ENSMUSP00000129447.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164202.8Link to Ensembl Protein Viewer:ENSMUSP00000129447.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164202Re-query CCDS DB by Protein ID:ENSMUSP00000129447
Original member Current member NCBI NM_001170847.1 NP_001164318.1 Accepted alive Link to Nucleotide Sequence:NM_001170847.1Link to Protein Sequence:NP_001164318.1Re-query CCDS DB by Nucleotide ID:NM_001170847Re-query CCDS DB by Protein ID:NP_001164318Link to BLAST:NP_001164318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164318.1 1199 Q3UQS8-1 1199 100% 0 0

Chromosomal Locations for CCDS 50468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53677408 53677592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53813248 53814340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53815516 53815577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53817146 53817237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53817923 53818020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53832646 53832789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53834648 53834779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53840979 53841058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53843223 53843844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53850102 53850188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53851177 53851816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53853504 53853635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53859392 53859513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53864080 53864190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3600 nt):
ATGGTGCTGGCAGTAGCCATGAGCCAGGACGCGGATCCCAGCGGTCCGGAGCAACCCGACAGAGATGCCT
GCGTTATGCCCGGTGTTCAGGGGCCCTCCGTGCCCCAGGGCCAGCAAGGGATGCAGCCTCTGCCGCCACC
GCCACCGCCTCAGCCTCAAGCCAGCCTGCCCCAGATCATCCAAAATGCTGCCAAGCTCCTGGATAAGAGC
CCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGG
CTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGT
TCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTG
CTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCT
CAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCA
GCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTACCTCAGACCCCTGCCCAGCCAGCTGTC
ATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACT
CCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCGGCCTCAGCCACAGC
ATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAA
GACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCA
TGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGG
CCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGCCAGCCTTATGAGCTC
TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGC
AGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGG
TCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAG
AAGGTGTTTGACTTGAAGGACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCT
TCTCAGAAAGTGCTGGCCTCCGGAGTATACGTGCTTCAGGAGAGGGGACACTGTCTGCCTCTGCTAACAG
CACAGCTGTTTATAACCCCACTGGAAACGAGGATTATACCTCAAATCTTGGAACATCATATGCAGCCATT
CCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGTTTTGCAGCAC
AGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGT
CATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGGCTTTC
TTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCA
ATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAGAAACCTGGGAAAAA
TGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAGGTAT
GGTCCAGAGCGGCCACGTTCTCGAAGTCCAATGAGCCGATCACTCTCCCCAAGATCCCATAGTCCCCCAG
GCCCCTCTCGGGCTGACTGGGGCAATGGCCGTGACTCCTACGCGTGGAGAGACGAGGATCGAGAGACTGT
CCCCAGGAGGGAGAACGGGGAAGACAAAAGAGACAGGTTGGATGTTTGGGCACATGACCGGAAACACTAT
CCTAGGCAGCTGGACAAAGCTGAGTTGGATGAGCGACTCGAAGGAGGGAGGGGCTACCGGGAAAAGTACT
TGAAGTCAGGGTCTCCCGGCCCACTCCATTCTGTGTCTGGCTACAAAGGCCGGGAAGATGGCTACCATCG
AAAAGAGCCTAAAGCCAAGTTGGACAAATACCCAAAGCAGCAGCCGGATGTGCCAGGAAGATCCAGAAGG
AAAGAAGAGGCGAGACTACGGGAGCCCAGACACCCTCACCCAGAGGATTCCGGCAAGGCAGAGGATCTGG
AGCCCAAGATCACGCGGGCCCCTGACGGTACCAAGTCCAAGCAAAGTGAGAAAAGTAAAACCAAGAGAGC
CGACAGAGACCAAGAAGGAGCTGACGACAAAAAAGAAAGCCAACTGGCCGAGAATGAGGCTGGAGCTGAG
GAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAA
AGAAGGGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGA
GTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAA
ATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTT
TGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAA
GCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTA
AATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACG
AGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCC
CCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCA
GAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAA
GCCAGGCTTGCCGAGAAAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCAC
CGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATT
CCTCTAGGAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAA
GCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAGAAGTACCTGTC
TCAGCTGGCAGAGGAGGGCCTGAAGGAGACGGAGGGGACAGACAGCCCAAGCCCCGAGCGTGGTGGGATT
GGTCCACACTTGGAAAGGAAGAAGCTATGA

Translation (1199 aa):
MVLAVAMSQDADPSGPEQPDRDACVMPGVQGPSVPQGQQGMQPLPPPPPPQPQASLPQIIQNAAKLLDKS
PFSVNNQNPLLTSPASVQLAQIQAQLTLHRLKMAQTAVTNNTAAATVLNQVLSKVAMSQPLFNQLRHPSV
LGTAHGPTGVSQHAASVPSAHFPSTAIAFSPPSQTGGPGPSVSLPSQPPNAMVVHTFSGVVPQTPAQPAV
ILSLGKAGPTPATTGFYDYGKANSGQAYGSETEGQPGFLPASASATASGSMTYEGHYSHTGQDGQPAFSK
DFYGPNAQGPHIAGGFPADQTGSMKGDVGGLLQGTNSQWERPPGFSGQNKPDITAGPSLWAPPASQPYEL
YDPEEPTSDRAPPAFGSRLNNSKQGFGCSCRRTKEGQAVLSVRPLQGHQLNDFRGLAPLHLPHICSICDK
KVFDLKDWELHVKGKLHAQKCLLFSESAGLRSIRASGEGTLSASANSTAVYNPTGNEDYTSNLGTSYAAI
PTRAFAQSNPVFPSASSGTSFAAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAF
LEMAYTEAAQAMVQYYQEKPAIINGEKLLIRMSTRYKELQLKKPGKNVAAIIQDIHSQRERDMLREADRY
GPERPRSRSPMSRSLSPRSHSPPGPSRADWGNGRDSYAWRDEDRETVPRRENGEDKRDRLDVWAHDRKHY
PRQLDKAELDERLEGGRGYREKYLKSGSPGPLHSVSGYKGREDGYHRKEPKAKLDKYPKQQPDVPGRSRR
KEEARLREPRHPHPEDSGKAEDLEPKITRAPDGTKSKQSEKSKTKRADRDQEGADDKKESQLAENEAGAE
EQEGMVGIQQEGTESCDPENTRTKKGQDCDSGSEPEGDNWYPTNMEELVTVDEVGEEDFIMEPDLPELEE
IVPIDQKDKTLPKICTCVTATLGLDLAKDFTKQGETLGNGDAELSLKLPGQVPSTSASCPNDTDLEMPGL
NLDAERKPAESETGLSLEVSNCYEKEARGEEDSDVSLAPAVQQMSSPQPADERARQSSPFLDDCKARGSP
EDGSHEASPLEGKASPPTESDLQSQACRENPRYMEVKSLNVRSPEFTEAELKEPLSLPSWEPEVFSELSI
PLGVEFVVPRTGFYCKLCGLFYTSEEAAKVSHCRSTVHYRNLQKYLSQLAEEGLKETEGTDSPSPERGGI
GPHLERKKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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