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Report for CCDS50429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50429.1 Public Mus musculus 19 Cep55 23 108 98 CCDS HistoryNCBI Gene:74107Re-query CCDS DB by CCDS ID:50429.1Re-query CCDS DB by GeneID:74107See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096096.11 ENSMUSP00000093802.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096096.11Link to Ensembl Protein Viewer:ENSMUSP00000093802.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096096Re-query CCDS DB by Protein ID:ENSMUSP00000093802
Original member Current member EBI ENSMUST00000169673.2 ENSMUSP00000127961.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169673.2Link to Ensembl Protein Viewer:ENSMUSP00000127961.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169673Re-query CCDS DB by Protein ID:ENSMUSP00000127961
Original member Current member EBI ENSMUST00000236044.1 ENSMUSP00000157898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236044.1Link to Ensembl Protein Viewer:ENSMUSP00000157898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236044Re-query CCDS DB by Protein ID:ENSMUSP00000157898
Original member Current member NCBI NM_001164362.2 NP_001157834.1 Accepted alive Link to Nucleotide Sequence:NM_001164362.2Link to Protein Sequence:NP_001157834.1Re-query CCDS DB by Nucleotide ID:NM_001164362Re-query CCDS DB by Protein ID:NP_001157834Link to BLAST:NP_001157834.1
Original member Current member NCBI NM_001360663.1 NP_001347592.1 Accepted alive Link to Nucleotide Sequence:NM_001360663.1Link to Protein Sequence:NP_001347592.1Re-query CCDS DB by Nucleotide ID:NM_001360663Re-query CCDS DB by Protein ID:NP_001347592Link to BLAST:NP_001347592.1
Original member Current member NCBI NM_028293.2 NP_082569.1 Accepted alive Link to Nucleotide Sequence:NM_028293.2Link to Protein Sequence:NP_082569.1Re-query CCDS DB by Nucleotide ID:NM_028293Re-query CCDS DB by Protein ID:NP_082569Link to BLAST:NP_082569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157834.1 462 Q8BT07-1 462 100% 0 0
NP_001347592.1 462 Q8BT07-1 462 100% 0 0
NP_082569.1 462 Q8BT07-1 462 100% 0 0

Chromosomal Locations for CCDS 50429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38057801 38057983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38060081 38060356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38062603 38062671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38069080 38069230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38069640 38069950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38071071 38071142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38071765 38071890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38073298 38073498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGTCTTCAAGAAGTCCCAAAGATTTAATTAAAAGCAAATGGGGATCAAGGCCTAGTAGCTCCAAGTCAG
ACACTGCATTAGAGAAATTTAAGGGAGAAATTGCAGCCTTTAAAACATCCCTGGATGAAATCACCTCTGG
GAAAGGAAAAATGGCCGAAAAAGGCAGAAGCAGACTCTTGGAGAAAATCCAAGTTCTTGAAGCCGAGAGA
GAAAAGAATGTTTATTACCTCCTGGAGAAGGACAAAGAAATACAGAGACTCAAAGACCACCTAAGGTCAA
GATATAGCTCTTCTTCATTGTTCGAGCAGCTGGAAGAGAAAACAAAGGAATGTGAGAAGAAGCAGCAGTT
GCTGGAGTCCCTATCCAAAGAGACAGATGTCCTGAAAAACCAGCTGTCCGCCACGACGAAAAGACTTTCT
GAACTTGAAAGCAAAGCCAGTACACTCCACCTGTCACAGAGCATGCCTGCAAACTGCTTCAACTCCTCAA
TGAATAGTATTCATGAAAAGGAGATGCAGCTGAAAGATGCTCTGGAGAAAAACCAGCAATGGCTTGTGTA
TGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAG
ACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAGGTTATCTTCAAGTGGAGAAGC
AAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTT
GCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAG
CTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCC
AAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCT
CTTATCCCAGGTCCGAATTCTCTACGATTCTCTGTTAAAGCACCAAGAGGAGCAGGCCAGGGTAGCTCTA
CTGGAACAGCAGATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGC
ATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTGAA
GCAGCTACATGGGTTTACCATCACAGAGCAGCCATTCCCACTCCAGAGAGAACCTGAAAGCAGAGTGAAA
GCTACCTCACCCAAAAGTCCCAGTGCTGCACTCAATGACAGCCTAGTGGAATGTCCCAAGTGCAGCGTAC
AGTACCCAGCCACCGAGCATCGAGACCTGCTTGTCCATGTCGAATACTGCATGAAGTAG

Translation (462 aa):
MSSRSPKDLIKSKWGSRPSSSKSDTALEKFKGEIAAFKTSLDEITSGKGKMAEKGRSRLLEKIQVLEAER
EKNVYYLLEKDKEIQRLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLS
ELESKASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFELEKRTE
TAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFRRKYEEARKEVEDLNQ
LLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSEELLSQVRILYDSLLKHQEEQARVAL
LEQQMQACTLDFENEKLDRQNMQHQLYVILKELRKAKSQITQLESLKQLHGFTITEQPFPLQREPESRVK
ATSPKSPSAALNDSLVECPKCSVQYPATEHRDLLVHVEYCMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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