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Report for CCDS50405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50405.1 Public Mus musculus 19 Ptar1 23 108 98 CCDS HistoryNCBI Gene:72351Re-query CCDS DB by CCDS ID:50405.1Re-query CCDS DB by GeneID:72351See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237333.1 ENSMUSP00000157782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237333.1Link to Ensembl Protein Viewer:ENSMUSP00000157782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237333Re-query CCDS DB by Protein ID:ENSMUSP00000157782
Original member Current member NCBI NM_028208.1 NP_082484.1 Accepted alive Link to Nucleotide Sequence:NM_028208.1Link to Protein Sequence:NP_082484.1Re-query CCDS DB by Nucleotide ID:NM_028208Re-query CCDS DB by Protein ID:NP_082484Link to BLAST:NP_082484.1

Chromosomal Locations for CCDS 50405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 23687460 23687545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23694321 23694490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23703078 23703144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23705707 23705811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23708754 23708967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23717813 23718102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23720058 23720400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCCGAGTCGAACGAGGAGGTGGCGGTGCTGGTGCAGAGGGTGGTGAAGGACATCACCAACGCCTTCC
GAAGGAACCCGCACATAGATGAAATTGGCCTGATCCCATGCCCTGAAGCAAGATATAACCGGAGTCCCAT
TGTCCTGGTTGAGAACAAACTTGGTGTGGAGAGCTGGTGTGTCAAGTTCTTATTACCATATGTCCACAAC
AAGCTCCTTTTGTACAGAACGAGAAAGCAATGGCTAAACAAAGATGAACTGGCTGACGTCACCTGCACCC
TGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAGGAAAGAGCTCATCCTCTCTGGCACTTT
AAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGG
ATTCACAGGCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAA
GCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGC
AGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAG
CTGGATCTGAAGATCCTTCTTGATGAACTGTCTTCTACTAAACACTGGGCGTCCATGCATGTCTCAGACC
ACAGTGGATTTCACTATCGCCAGTTCTTGCTAAAGTCATTGATTAGCCAGACTACGATAGACAGTGCTGT
ACCGCAGCACAACTCTTTGAAAAGTGAGCCAAAAGATGAAGCAGCGGCAGCCTCAACAGAGGAGCCAAGT
GTGAATCTTCCCCAGCTCCTAGAAGAAGAGGTGGAATTCTGCACAGATCTTATTGATTCCTATCCAGGAC
ATGAAACCCTTTGGTGTCACAGGCGGCACGTTTTCTACCTTCAGCATCACTTAAATGGCAGGCTCCCTCC
CAACCTGACTCACCTGTCACCTGCAGACTGCCCTGGGGGCGCTTTGAATGACTCGCTCCAGATTCCAACA
AGCCCTCAACTATCTCAGGCAATGGAAGTGGACGGACTGAGTGACTCTAGCAAGCAAGGCTATTCCCAGG
AAACCAAGCGCCTGAAGCGGACCCCAGCTCCAGACTCCCTAGGCCTGGAGATGGAGCACAGGTTTATTGA
TCAAGTATTGTCCACTTGTCGGAACGTAGAGCAAGTCAGGTATGCCAATGCATACAGGAAATGGCTGGTG
ACTCTGAGTCAGTGA

Translation (424 aa):
MAESNEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHN
KLLLYRTRKQWLNKDELADVTCTLLLLNPDFTTAWNVRKELILSGTLSPIKDLHLGKLALTKFPKSPETW
IHRRWVLQQLSQETFLPSSVAKGSLGAVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVLQNVAK
LDLKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTTIDSAVPQHNSLKSEPKDEAAAASTEEPS
VNLPQLLEEEVEFCTDLIDSYPGHETLWCHRRHVFYLQHHLNGRLPPNLTHLSPADCPGGALNDSLQIPT
SPQLSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQVRYANAYRKWLV
TLSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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