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Report for CCDS50394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50394.1 Public Mus musculus 19 Ms4a19 23 108 98 CCDS HistoryNCBI Gene:69416Re-query CCDS DB by CCDS ID:50394.1Re-query CCDS DB by GeneID:69416See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078770.4 ENSMUSP00000077828.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078770.4Link to Ensembl Protein Viewer:ENSMUSP00000077828.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078770Re-query CCDS DB by Protein ID:ENSMUSP00000077828
Original member Current member NCBI NM_027074.4 NP_081350.1 Accepted alive Link to Nucleotide Sequence:NM_027074.4Link to Protein Sequence:NP_081350.1Re-query CCDS DB by Nucleotide ID:NM_027074Re-query CCDS DB by Protein ID:NP_081350Link to BLAST:NP_081350.1

Chromosomal Locations for CCDS 50394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11141531 11141638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11142337 11142453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11146729 11146785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11163400 11163453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGAATATGCCACAGAATCGTTTGTGGATAAAAAAGGAACTGAGAGTCTTGGGGTTTAGCCTATCAGGAA
GTTTATCAATAATACTACAGAAGAGGCCTTCAAATCATACGCTGATCTGGACCATGACAATGAATATCCT
AAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATAT
TCTACCCTGTGGCAATATAAGAGTGGCAGGGTGCTTACAGAATATCTGTTCCTGTTCAGCATGTTGGAGT
TGTTCATGGCATCCATAGTAACTGAGTGGACCTATAGAGCAAGACAAATAGAATAA

Translation (111 aa):
MNMPQNRLWIKKELRVLGFSLSGSLSIILQKRPSNHTLIWTMTMNILSIFATLVGLFLTTVEMIVTSSVY
STLWQYKSGRVLTEYLFLFSMLELFMASIVTEWTYRARQIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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