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Report for CCDS50237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50237.1 Public Mus musculus 18 Mapre2 23 108 98 CCDS HistoryNCBI Gene:212307Re-query CCDS DB by CCDS ID:50237.1Re-query CCDS DB by GeneID:212307See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115830.7 ENSMUSP00000111496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115830.7Link to Ensembl Protein Viewer:ENSMUSP00000111496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115830Re-query CCDS DB by Protein ID:ENSMUSP00000111496
Original member Current member NCBI NM_001162941.1 NP_001156413.1 Accepted alive Link to Nucleotide Sequence:NM_001162941.1Link to Protein Sequence:NP_001156413.1Re-query CCDS DB by Nucleotide ID:NM_001162941Re-query CCDS DB by Protein ID:NP_001156413Link to BLAST:NP_001156413.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156413.1 317 Q8R001-2 317 100% 0 0

Chromosomal Locations for CCDS 50237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 23753834 23753869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23772604 23772659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23832853 23832980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23853654 23853799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23857944 23858157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23877944 23878083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23883538 23883696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23890857 23890931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAAACAGATCAGAGATCAACGGGTAATCAGAAAGGGTCCCCAGAAGCACCATTCACTTCAACAGCCAG
GGAGAGTGCCTGGATGTTCAAATTGGGGAATGGCGGTCAATGTGTATTCTACCTCGATAACCCAGGAGAC
TATGAGCAGGCATGACATCATTGCATGGGTCAATGACATCGTGTCTCTAAACTACACAAAAGTGGAACAG
CTCTGTTCAGGAGCAGCCTATTGCCAGTTCATGGACATGCTCTTCCCGGGCTGTATTAGTTTGAAGAAAG
TAAAATTCCAAGCAAAGTTGGAGCATGAGTATATTCACAACTTTAAACTTCTGCAAGCATCCTTTAAACG
GATGAATGTTGATAAGGTAATCCCAGTGGAGAAGCTGGTGAAAGGGCGTTTCCAAGACAACCTGGATTTT
ATTCAGTGGTTTAAGAAGTTCTACGATGCTAACTATGACGGGAAGGAGTACGATCCTGTTGAGGCCCGAC
AAGGGCAAGATGCAATTCCTCCCCCTGACCCTGGTGAACAGATCTTCAACCTGCCCAAGAAGTCGCACCA
TGCAAACTCCCCCACAGCAGGCGCGGCTAAGTCAAGTCCTGCATCTAAGCCAGGATCCACACCTTCTCGC
CCCTCGTCTGCCAAAAGGGCTTCATCCAGTGGCTCTGCATCCAGATCTGACAAAGATTTAGAAACGCAGG
TCATACAGCTCAACGAGCAGGTACATTCATTGAAACTCGCCCTAGAAGGTGTGGAGAAGGAGAGGGATTT
CTACTTCGGGAAGTTGAGAGAGATTGAGCTGCTGTGCCAAGAACATGGGCAGGAGAACGATGACCTCGTG
CAGCGACTAATGGAAGTGCTCTACGCTTCCGATGAACAGGAGGGCCAAACGGAAGAGCCAGAAGCAGAGG
AGCAAGCCCATGACCAGCAGCCCCAGCAGCAGGAGGAGTACTGA

Translation (317 aa):
MKQIRDQRVIRKGPQKHHSLQQPGRVPGCSNWGMAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQ
LCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDF
IQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPASKPGSTPSR
PSSAKRASSSGSASRSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLV
QRLMEVLYASDEQEGQTEEPEAEEQAHDQQPQQQEEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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