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Report for CCDS50081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50081.1 Public Mus musculus 17 Lsm2 23 108 98 CCDS HistoryNCBI Gene:27756Re-query CCDS DB by CCDS ID:50081.1Re-query CCDS DB by GeneID:27756See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114011.10 ENSMUSP00000109644.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114011.10Link to Ensembl Protein Viewer:ENSMUSP00000109644.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000114011Re-query CCDS DB by Protein ID:ENSMUSP00000109644
Original member Current member NCBI NM_001110101.2 NP_001103571.1 Accepted alive Link to Nucleotide Sequence:NM_001110101.2Link to Protein Sequence:NP_001103571.1Re-query CCDS DB by Nucleotide ID:NM_001110101Re-query CCDS DB by Protein ID:NP_001103571Link to BLAST:NP_001103571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103571.1 95 O35900 95 100% 0 0

Chromosomal Locations for CCDS 50081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34982083 34982085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34982620 34982687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34985109 34985139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34985249 34985308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34985417 34985542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGCTCTTCTACTCCTTTTTCAAGTCTCTTGTGGGCAAGGATGTAGTCGTGGAACTCAAGAATGACCTGA
GCATCTGTGGAACCCTCCACTCTGTGGACCAGTACCTCAATATCAAACTAACCGACATCAGTGTCACAGA
CCCTGAGAAATACCCTCACATGTTATCAGTCAAGAACTGCTTCATCAGGGGCTCAGTCGTCCGCTATGTG
CAGCTGCCAGCAGATGAGGTGGACACACAACTGCTACAGGATGCAGCAAGGAAGGAAGCCCTTCAGCAGA
AGCAGTGA

Translation (95 aa):
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYV
QLPADEVDTQLLQDAARKEALQQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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