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Report for CCDS49948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49948.1 Public Mus musculus 17 Pnldc1 23 108 98 CCDS HistoryNCBI Gene:240023Re-query CCDS DB by CCDS ID:49948.1Re-query CCDS DB by GeneID:240023See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163394.2 ENSMUSP00000129377.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163394.2Link to Ensembl Protein Viewer:ENSMUSP00000129377.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163394Re-query CCDS DB by Protein ID:ENSMUSP00000129377
Original member Current member NCBI NM_001034866.1 NP_001030038.1 Accepted alive Link to Nucleotide Sequence:NM_001034866.1Link to Protein Sequence:NP_001030038.1Re-query CCDS DB by Nucleotide ID:NM_001034866Re-query CCDS DB by Protein ID:NP_001030038Link to BLAST:NP_001030038.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030038.1 531 B2RXZ1 531 100% 0 0

Chromosomal Locations for CCDS 49948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12888906 12888969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12890076 12890174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12890279 12890454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12890721 12890820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12892136 12892178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12892320 12892373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12892759 12892823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12894360 12894415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12895512 12895597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12897261 12897330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12899533 12899676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12899841 12899917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12903208 12903308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12905506 12905594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12905762 12905885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12906498 12906537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12909053 12909126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12909462 12909519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12909836 12909911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGACGTGGGCGCGGACGAATTTGAGCAGAGCCTTCCACTCCTGCAGGAGCTTGTCGCGGGTGCGGACT
TCGTGGGTCTGGATATAGAGTTCACAGGTCTGCGTTCAAACTTGTCTCGGCCCCAACAGATCAGTCTTTT
TGACTTGCCATCTGAGTGGTATCTGAAGACCCGGCAGAGTGTTCAGCAGTTTACAATCTGTCAGATTGGA
TTGTCCATGTTTTCCAGCATCGAAGGAGAGTCAAACAAGTATGTAGCACACTCCTGCAATTTCTTTCTCT
TCCCTACAACATTTGGGATCCTGGACTCAGAGTTCTCTTTCCAGGCATCTAGTGTGCAGTTTCTGAATCA
GTATGGCTTCGACTATAACAAGTTCCTCAAAAATGGAATCCCATACATGAATGAAGAGCAGGAGAAGAAA
ATCAAGCACAGTATCCTAAGAGGGAACTGGAGAGTCCGAAGCTCTCTGGATAAAGACCAAATCAAGGTGG
TGATTGATAAGGTGACCCAGTGGCTGGACCTGGCTGAGGAAGGTGACCAGATGACTCTGCCTGGCATCGC
TGGGTTCCAAGCCTTTGAGGTCCAACTGGTGCTGAGGCAGGCCCTCCCCAACATCTGGACAGTGCTGAAA
GAGGAGTGGGTGATTGTGAAGAAGGTGAGCCAGCCACAACGCTGGTACCTTGAGCACGCCTCTTGTGACC
AAGTCAGCTGTTGGAAGGAACAGATTCTTCTCTCTGCAAGAGGCTTCTCTGTCTTTTTCCAGATGTTGGT
GAAAGCCCAGAAGCCCTTGGTAGGACATAACATGATGATGGACCTACTGCATCTCCATGAGAAGTTCTTC
CGACCTCTTCCAGAAAGCTATGATCAGTTTAAGCAGAACATCCATAGCCTGTTTCCTGTCCTCATTGACA
CTAAGAACGTGACAAAGGACATCTGGAAGGAACTGCGTTTCCCACGGGTCTCCAACCTCTTGGAAGTGTA
CGAAGTGCTGAGCAGTAACTTGAATCCCACTAAGGATTCTGGACCGGTGATTATTCACGCAAGACAGTGT
AAAAAATACGCTGAGACCAAGTGCCCTCACGAAGCAGCCTATGACGCTTTCCTCTGCGGGTCAGTTCTTT
TGAAAGTGGCTCACTTGCTCCTGCAGAGGGTGCATGGCAACGGTGCTGTGCACGAGCCTGCCTTCCCCCA
ATACCTTGATGTGCTGGCGCCTTACGTGAACCAAGTGAACCTTATCCGAGCTGGGGTTCCGAAAATTAAT
TTTTCTGGTCCCGATTACCCCAGCATCCGCCCTCCTGTACTCATCCTCACCGTCAAGAGGTGGCCTGGGG
TGAGCGAGCAGCAGGTCTACCGTGAGTTCCAGAATCTCTGCAAGTTCGATGTCAGGCGGTTCACTCGAAG
CCAGTTCCTGCTCCTGACCAATAAGTTTAAGGATGCCCGCAGTGTCTTGAAGGAGTACAGGAACCACCCA
ACCCTGCAGGTCTCCTTGTACCGGTCCTGGAGACATTCCCCCAACATCACCTGCCTGTTACAGGTCTGCA
GCATAGTCACCACCTGGGCCATGATTGCATTTCTCCTGGGAAGACCCATGCCCTGA

Translation (531 aa):
MDVGADEFEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQQFTICQIG
LSMFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKK
IKHSILRGNWRVRSSLDKDQIKVVIDKVTQWLDLAEEGDQMTLPGIAGFQAFEVQLVLRQALPNIWTVLK
EEWVIVKKVSQPQRWYLEHASCDQVSCWKEQILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFF
RPLPESYDQFKQNIHSLFPVLIDTKNVTKDIWKELRFPRVSNLLEVYEVLSSNLNPTKDSGPVIIHARQC
KKYAETKCPHEAAYDAFLCGSVLLKVAHLLLQRVHGNGAVHEPAFPQYLDVLAPYVNQVNLIRAGVPKIN
FSGPDYPSIRPPVLILTVKRWPGVSEQQVYREFQNLCKFDVRRFTRSQFLLLTNKFKDARSVLKEYRNHP
TLQVSLYRSWRHSPNITCLLQVCSIVTTWAMIAFLLGRPMP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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