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Report for CCDS49917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49917.1 Public Mus musculus 16 Runx1 23 108 98 CCDS HistoryNCBI Gene:12394Re-query CCDS DB by CCDS ID:49917.1Re-query CCDS DB by GeneID:12394See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023673.13 ENSMUSP00000023673.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023673.13Link to Ensembl Protein Viewer:ENSMUSP00000023673.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023673Re-query CCDS DB by Protein ID:ENSMUSP00000023673
Original member Current member NCBI NM_001111021.2 NP_001104491.1 Accepted alive Link to Nucleotide Sequence:NM_001111021.2Link to Protein Sequence:NP_001104491.1Re-query CCDS DB by Nucleotide ID:NM_001111021Re-query CCDS DB by Protein ID:NP_001104491Link to BLAST:NP_001104491.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104491.1 465 Q03347-4 465 99.7849% 0 1

Chromosomal Locations for CCDS 49917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92605655 92606124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92613599 92613760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92644154 92644345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92668708 92668812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92688976 92689132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92695484 92695737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92825589 92825646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCTTCAGACAGCATTTTTGAGTCATTTCCTTCATATCCACAGTGCTTCATGAGAGATGCCAGCACGA
GCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGCCCCGGCAAGATGAGCGAGGCGCTGCCGCTGGGCGC
CCCGGATGGCGGCGCCGCCCTGGCCAGCAAGCTGAGGAGCGGCGACCGCAGCATGGTGGAGGTACTAGCT
GACCACCCTGGCGAGCTAGTGCGCACCGACAGCCCCAACTTCCTCTGCTCCGTGCTACCCACTCACTGGC
GCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCACTGGGGGACGTCCCGGATGGCACTCTGGT
CACCGTCATGGCAGGCAACGATGAAAACTACTCGGCAGAACTGAGAAATGCTACCGCGGCCATGAAGAAC
CAGGTAGCGAGATTCAACGACCTCAGGTTTGTCGGGCGGAGCGGTAGAGGCAAGAGCTTCACTCTGACCA
TCACCGTCTTTACAAATCCGCCACAAGTTGCCACCTACCATAGAGCCATCAAAATCACAGTGGACGGCCC
CCGAGAACCCCGAAGACATCGGCAGAAACTAGATGATCAGACCAAGCCCGGGAGTTTGTCCTTTTCCGAG
CGGCTCAGTGAATTGGAGCAGCTGCGGCGCACGGCCATGAGGGTCAGCCCGCACCACCCAGCCCCCACGC
CCAACCCTCGGGCCTCCTTGAACCACTCCACTGCCTTTAACCCTCAGCCTCAAAGTCAGATGCAGGATGC
CAGGCAGATCCAGCCATCCCCACCGTGGTCCTATGACCAGTCCTACCAGTACCTGGGATCCATCACCTCT
TCCTCTGTCCACCCAGCGACACCCATTTCACCCGGCCGTGCCAGCGGCATGACCAGCCTCTCTGCAGAAC
TTTCCAGTCGACTCTCAACGGCTCCGGACCTGACCGCCTTCGGCGACCCACGCCAGTTCCCTACTCTGCC
GTCCATCTCCGACCCGCGCATGCACTACCCAGGCGCCTTCACCTACTCGCCGCCCGTCACGTCGGGCATC
GGCATCGGCATGTCAGCCATGAGCTCGGCCTCTCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCT
CATCACAGGCGCAGGCCGGGCCCTTCCAGACCGGCTCGCCCTCCTACCATCTATACTACGGCGCCTCGGC
CGGTTCCTACCAGTTCTCCATGGTGGGCGGAGAGAGATCGCCCCCGCGCATCCTGCCGCCCTGCACCAAC
GCATCCACCGGCGCCGCGCTGCTCAACCCCAGCCTCCCCAGCCAGAGCGACGTGGTGGAGACCGAGGGCA
GCCATAGCAACTCGCCCACCAACATGCCCCCCGCGCGCCTGGAGGAGGCCGTGTGGCGGCCCTACTGA

Translation (465 aa):
MASDSIFESFPSYPQCFMRDASTSRRFTPPSTALSPGKMSEALPLGAPDGGAALASKLRSGDRSMVEVLA
DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKN
QVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSE
RLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDARQIQPSPPWSYDQSYQYLGSITS
SSVHPATPISPGRASGMTSLSAELSSRLSTAPDLTAFGDPRQFPTLPSISDPRMHYPGAFTYSPPVTSGI
GIGMSAMSSASRYHTYLPPPYPGSSQAQAGPFQTGSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTN
ASTGAALLNPSLPSQSDVVETEGSHSNSPTNMPPARLEEAVWRPY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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