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Report for CCDS49332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49332.1 Public Mus musculus 13 Pde8b 23 108 98 CCDS HistoryNCBI Gene:218461Re-query CCDS DB by CCDS ID:49332.1Re-query CCDS DB by GeneID:218461See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162412.7 ENSMUSP00000124409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162412.7Link to Ensembl Protein Viewer:ENSMUSP00000124409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162412Re-query CCDS DB by Protein ID:ENSMUSP00000124409
Original member NCBI NM_172263.2 NP_758467.2 Updated not alive Link to Nucleotide Sequence:NM_172263.2Link to Protein Sequence:NP_758467.2Re-query CCDS DB by Nucleotide ID:NM_172263Re-query CCDS DB by Protein ID:NP_758467
Current member NCBI NM_172263.3 NP_758467.2 Accepted alive Link to Nucleotide Sequence:NM_172263.3Link to Protein Sequence:NP_758467.2Re-query CCDS DB by Nucleotide ID:NM_172263Re-query CCDS DB by Protein ID:NP_758467Link to BLAST:NP_758467.2

Chromosomal Locations for CCDS 49332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95026120 95026229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95027618 95027747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95030313 95030480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95032830 95032950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95034169 95034386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95041865 95042063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95042900 95043035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95043427 95043472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95046322 95046486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95047737 95047813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95049926 95050003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95052888 95052930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95086728 95086868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95090278 95090356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95095636 95095724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95100889 95100946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95104653 95104712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95107655 95107845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95123264 95123320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95250134 95250160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGGACCAGCAGCAGAGCGTGCGCCAGGTGTCTTCTGCAGAGGTGCGCATTGGGCCCATGAGACTGACAC
AGGACCCTATCCAGGTTCTGCTAATCTTCGCAAAGGAAGATAGCCAGAGTGATGGCTTCTGGTGGGCCTG
TGACAGAGCTGGCTACAGATGCAACATCGCTCGCACTCCAGAGTCGGCCCTCGAGTGCTTTCTGGACAAG
CATCATGAAATTATTGTGATCGATCACAGGCAGAGCCGGAACTTTGATGCAGAAGCCGTGTGCAGGTCAA
TCCGGGCCACGAACCCCTCTGAGCACACGGTGATCCTGGCTGTCGTTTCACAAGCATCTGATGACCATGA
AGAGGCCTCAGTCCTTCCTCTTCTTCATGCAGGCTTCAACCGGAGATTTATGGAGAACAGCAGCATAATT
GCTTGCTATAATGAACTGATTCAAATAGAACACGGGGAAGTTCGCTCACAGTTCAAATTACGGGCCTGTA
ATTCAGTGTTTACAGCGTTAGACCACTGTCACGAAGCCATAGAAATAACAAGTGATGACCATGTGATTCA
GTATGTCAACCCTGCCTTTGAGAGGATGATGGGCTACCACAAAGGGGAGCTCCTGGGGAAGGAACTCGCT
GACCTACCTAAGAGTGACAAGAACCGGGCAGACCTCCTGGACACCATCAACACGTGCATCAAGAAGGGAA
AGATTCACCGGATTCATCGTGACTCCGGGGACAACTCTCAGACAGAGCCTCATTCGTTCAGACACAAGAG
CAGGAGGAAAGAGTCCATTGATGTGAAATCAATATCTTCTCGGGGCAGTGATGCGCCAAGCCTACAGAAT
CGCCGCTACCCCTCCATGGCCAGGATCCACTCCATGACCATTGAGGCTCCCATCACAAAGGTTATAAATA
TAATCAATGCAGCTCAGGAGAACAGCCCAGTTACAGTAGCAGAGGCCTTGGACAGAGTCCTAGAAATTTT
ACGGACCACAGAACTGTATTCCCCTCAGCTGGGAACCAAAGATGAGGATCCCCACACCAGTGACCTTGTT
GGGGGCCTGATGACTGATGGCTTGAGGAGACTGTCAGGGAACGAGTATGTGTTTACAAAGAATGTGCACC
ACAGTCACAGTCACCTCTCGATGCCCATCACCATCAATGATGTCCCCCCAAGTATCGCCCAGCTCCTTGA
TAATGAGGAAAGCTGGGACTTCAACATCTTTGAATTGGAAGCCGTTACACATAAAAGGCCACTTGTGTAC
CTGGGCTTAAAGGTCTTCTCTCGGTTTGGAGTATGTGAATTTTTAAACTGTACTGAAACCACTCTTCGGG
CCTGGCTGCAAGTGATTGAAGCCAACTACCACTCCTCCAACGCCTACCACAACTCCACCCATGCTGCCGA
TGTACTGCATGCCACGGCTTTCTTCCTTGGAAAGGAAAGAGTGAAGGGAAGCCTGGACCAGCTGGATGAG
GTGGCTGCTCTGATTGCTGCCACAGTCCACGACGTGGATCACCCCGGAAGGACCAACTCTTTCCTGTGCA
ACGCCGGCAGCGAGCTCGCTGTGCTCTACAATGACACTGCAGTCTTGGAGAGTCACCACACAGCCCTGGC
CTTCCAGCTCACAGTCAAGGACACCAAGTGCAACATTTTCAAGAATATTGACAGGAACCACTATCGAACG
CTGCGCCAGGCTATTATCGACATGGTTTTGGCTACAGAGATGACAAAACACTTCGAGCACGTGAACAAAT
TCGTGAACAGCATCAACAAGCCACTGGCAGCTGAGAGTGAGGGCAGTGATTGTGAATGCAACCCTACCGG
GAAGAACTTTCCTGAGAACCAAATCCTCATCAAACGCATGATGATTAAGTGTGCCGACGTGGCCAACCCG
TGCCGGCCCTTGGACCTGTGCATTGAATGGGCTGGAAGGATCTCCGAGGAGTACTTTGCTCAGACTGATG
AAGAGAAGAGGCAGGGGCTGCCTGTGGTGATGCCAGTGTTCGACCGCAATACCTGCAGCATCCCCAAGTC
CCAGATCTCCTTCATCGACTACTTCATAACAGACATGTTTGATGCTTGGGATGCCTTCGCTCACCTGCCT
GCCCTGATGCAGCACCTGGCCGATAACTATAAACACTGGAAGACACTGGATGACCTCAAGTGCAAAACTC
TGAGACTTCCATCTGACAGCTGA

Translation (730 aa):
MDQQQSVRQVSSAEVRIGPMRLTQDPIQVLLIFAKEDSQSDGFWWACDRAGYRCNIARTPESALECFLDK
HHEIIVIDHRQSRNFDAEAVCRSIRATNPSEHTVILAVVSQASDDHEEASVLPLLHAGFNRRFMENSSII
ACYNELIQIEHGEVRSQFKLRACNSVFTALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELA
DLPKSDKNRADLLDTINTCIKKGKIHRIHRDSGDNSQTEPHSFRHKSRRKESIDVKSISSRGSDAPSLQN
RRYPSMARIHSMTIEAPITKVINIINAAQENSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLV
GGLMTDGLRRLSGNEYVFTKNVHHSHSHLSMPITINDVPPSIAQLLDNEESWDFNIFELEAVTHKRPLVY
LGLKVFSRFGVCEFLNCTETTLRAWLQVIEANYHSSNAYHNSTHAADVLHATAFFLGKERVKGSLDQLDE
VAALIAATVHDVDHPGRTNSFLCNAGSELAVLYNDTAVLESHHTALAFQLTVKDTKCNIFKNIDRNHYRT
LRQAIIDMVLATEMTKHFEHVNKFVNSINKPLAAESEGSDCECNPTGKNFPENQILIKRMMIKCADVANP
CRPLDLCIEWAGRISEEYFAQTDEEKRQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFAHLP
ALMQHLADNYKHWKTLDDLKCKTLRLPSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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