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Report for CCDS49266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49266.1 Public Mus musculus 13 Rnf44 23 108 98 CCDS HistoryNCBI Gene:105239Re-query CCDS DB by CCDS ID:49266.1Re-query CCDS DB by GeneID:105239See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037422.15 ENSMUSP00000043974.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037422.15Link to Ensembl Protein Viewer:ENSMUSP00000043974.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000037422Re-query CCDS DB by Protein ID:ENSMUSP00000043974
Original member Current member EBI ENSMUST00000128257.7 ENSMUSP00000116850.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128257.7Link to Ensembl Protein Viewer:ENSMUSP00000116850.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128257Re-query CCDS DB by Protein ID:ENSMUSP00000116850
Original member Current member EBI ENSMUST00000177950.7 ENSMUSP00000136732.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177950.7Link to Ensembl Protein Viewer:ENSMUSP00000136732.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177950Re-query CCDS DB by Protein ID:ENSMUSP00000136732
Original member Current member NCBI NM_134064.2 NP_598825.2 Accepted alive Link to Nucleotide Sequence:NM_134064.2Link to Protein Sequence:NP_598825.2Re-query CCDS DB by Nucleotide ID:NM_134064Re-query CCDS DB by Protein ID:NP_598825Link to BLAST:NP_598825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598825.2 350 Q3UHJ8-2 350 100% 0 0

Chromosomal Locations for CCDS 49266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54681749 54681811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54681934 54682033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682113 54682234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682327 54682414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682580 54682701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682789 54682950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683043 54683216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683595 54683762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683961 54684014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGCTGCACCCAGCCACCCAGCAGAGCCCGTTCATGGTTGATCTCCACGAACAAGTGCACCAGGGACCTG
TCCCTCTGTCCTACACGGTCACCACAGTGACAACCCAAGGCTTCCCTTTGCCTACAAGCCAACACATCCC
TGGCTGCAGTGCCCAGCAGCTCCCAGCATGCTCCGTGATGTTCAGTGGGCAGCACTACCCCCTCTGCTGC
CTCCCACCTCCGCTGATCCAGGCGTGCACCATGCAGCAGCTCCCTGGGCCCTACCACACCTACCCCCACC
TCATCTCCAGTGACCACTACATCCTTCACCCACCACCGCCAGCCCCACCGCCCCAGCCTACCCACATGGC
ACCGCTTGGGCAGTTTGTGTCCCTGCAGACCCAGCACCCACGTATGCCCCTGCAGCGGCTGGATAACGAG
ATGGACCTTCGAGGAGACCAGCACCCCTTGGGTAGCTTCACTTACTCCACCTCTGCCACTGGCCCAGCCT
TGTCGCCCTCAGTGCCCCTTCACTACCTACCCCATGATCCACTGCACCAGGAGCTGTCCTTTGGTGTGCC
ATATTCCCACATGATGCCACGAAGACTGAGCACACAGAGATACCGCCTGCAACAGCCGCTGCCACCACCC
CCACCGCCGCCGCCACCATCTTACTACCCAAGCTTCCTACCCTACTTCCTTTCAATGCTGCCAATGTCAC
CGACCACCGTGGGCCCCACCATCAGCTTGGACCTGGACGTGGATGACGTAGAGATGGAGAACTATGAGGC
TCTCCTGAACCTGGCTGAGCGGCTGGGAGACGCCAAGCCCCGGGGCCTCACCAAAGCAGACATCGAACAA
CTGCCGTCGTATCGCTTTAACCCTGACAGCCATCAGTCTGAGCAGACTCTGTGTGTGGTCTGCTTCAGTG
ACTTCGAGGTGCGGCAACTGCTCCGAGTCCTCCCCTGCAACCACGAGTTCCATGCCAAGTGTGTTGACAA
GTGGTTGAAGGCCAACCGGACCTGTCCCATTTGCCGGGCGGATGCCTCCGAGGTGCCCAGGGAGGCCGAG
TGA

Translation (350 aa):
MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCC
LPPPLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNE
MDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPP
PPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQ
LPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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