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Report for CCDS49211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49211.1 Public Mus musculus 13 Zscan26 23 108 98 CCDS HistoryNCBI Gene:432731Re-query CCDS DB by CCDS ID:49211.1Re-query CCDS DB by GeneID:432731See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032820.14 ENSMUSP00000032820.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032820.14Link to Ensembl Protein Viewer:ENSMUSP00000032820.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032820Re-query CCDS DB by Protein ID:ENSMUSP00000032820
Original member NCBI NM_001013786.3 NP_001013808.2 Updated not alive Link to Nucleotide Sequence:NM_001013786.3Link to Protein Sequence:NP_001013808.2Re-query CCDS DB by Nucleotide ID:NM_001013786Re-query CCDS DB by Protein ID:NP_001013808
Current member NCBI NM_001013786.4 NP_001013808.2 Accepted alive Link to Nucleotide Sequence:NM_001013786.4Link to Protein Sequence:NP_001013808.2Re-query CCDS DB by Nucleotide ID:NM_001013786Re-query CCDS DB by Protein ID:NP_001013808Link to BLAST:NP_001013808.2

Chromosomal Locations for CCDS 49211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21444931 21445829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21447786 21447894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21449441 21449455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCACTGGCCTTGGACTCAGCCCAAAGAAGCAGACCAACGGTGCTGGTTGGCGAGCCAGCCCCTCGCA
GGGAAGCACGGGAGCAGCCTGGGTGTGCGCTTCCTCAGAAGCCTGAGGAGAGAGGTAAAGAGACAAGGAG
TGAGAATGGGAATCTCATTGCAGGGACAGACTCTTGTGGAAGAATGGAATCATCTTGTACCATGACTGAA
CCCATTGAGGCCCAGTGTGAGGACCTGAGCTTGAAAAAGAATCCAGCCATGCCCAAGGAAAAAACTAACA
GCCAATGCTTGGAAACTAAGGAGAGACTTGTTCAGAACTCAGGCCTGATTGAACATGACAGGGCACATAC
AGGAGAAATGTCCTGGGAATCTGTAGGATCTCAGAGTTCTGTTGCTGCTGACCATCAGGAAATCTCTAAA
GACAAAGGTCATCCCTGCCAAGAGTGTGGGAAAGTCTTTCAGAGAAGTTCACACCTCATCAGACATCAGA
AAATCCATCTTGGGGAGAAGCCTTACCAGTGCAAAGAGTGTGGAAAAGTCTTTAGCCAGAATGCAGGTCT
TTTGGAGCATCTCAGGATCCATACTGGAGAAAAACCCTATCTGTGTATCCATTGTGGAAAGAACTTCAGG
CGAAGCTCTCATCTTAATCGACACCAAAAAATTCACAGTCAGGATGAGCCCCGAGAATGCAAGGAGTGTG
GGAAAACCTTTAGTCGGGCCCTCCTCCTCACCCACCATCAGAGAGTCCATGGTCGTTCCAAAAGACATCA
CTGTAATGAGTGTGGGAAAGCCTTCAGCTTGACCTCCGACCTTATTCGACATCATAGGATTCACACTGGA
GAAAAACCTTTCAAATGTAATGTGTGTCAGAAAGCTTTCCGCCTAAATTCACACTTAGATCAGCATGTTA
GAATCCACAATGAAGAAAAACCCTACAAGTGCAGTGAATGCAATGAAGCCTTCAGGCAGAAGTCTGGTCT
CTTTCAGCATCAGAGACATCACCATAAAAGCAAACTGGCTTGA

Translation (340 aa):
MALALDSAQRSRPTVLVGEPAPRREAREQPGCALPQKPEERGKETRSENGNLIAGTDSCGRMESSCTMTE
PIEAQCEDLSLKKNPAMPKEKTNSQCLETKERLVQNSGLIEHDRAHTGEMSWESVGSQSSVAADHQEISK
DKGHPCQECGKVFQRSSHLIRHQKIHLGEKPYQCKECGKVFSQNAGLLEHLRIHTGEKPYLCIHCGKNFR
RSSHLNRHQKIHSQDEPRECKECGKTFSRALLLTHHQRVHGRSKRHHCNECGKAFSLTSDLIRHHRIHTG
EKPFKCNVCQKAFRLNSHLDQHVRIHNEEKPYKCSECNEAFRQKSGLFQHQRHHHKSKLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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