NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48887.1 Under review, update Mus musculus 11 Mycbpap 23 108 98 CCDS HistoryNCBI Gene:104601Re-query CCDS DB by CCDS ID:48887.1Re-query CCDS DB by GeneID:104601See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093945.9 ENSMUSP00000091477.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093945.9Link to Ensembl Protein Viewer:ENSMUSP00000091477.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093945Re-query CCDS DB by Protein ID:ENSMUSP00000091477
Original member NCBI NM_170671.2 NP_733771.2 Updated not alive Link to Nucleotide Sequence:NM_170671.2Link to Protein Sequence:NP_733771.2Re-query CCDS DB by Nucleotide ID:NM_170671Re-query CCDS DB by Protein ID:NP_733771
Current member NCBI NM_170671.3 NP_733771.3 Pending alive Link to Nucleotide Sequence:NM_170671.3Link to Protein Sequence:NP_733771.3Re-query CCDS DB by Nucleotide ID:NM_170671Re-query CCDS DB by Protein ID:NP_733771Link to BLAST:NP_733771.3

Chromosomal Locations for CCDS 48887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94501419 94501520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94503126 94503296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94503471 94503616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94504050 94504165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94504873 94504994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94505425 94505814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94506376 94506522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94507547 94507734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94508104 94508293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94509243 94509354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94509757 94509872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94509959 94510074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94511625 94511766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94512228 94512343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94512591 94512777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94513518 94513621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94513782 94513941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94514528 94514655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94521400 94521445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGATGAAGAAGATTACTGAAAGGCAGTCCCCGCTCAAGTTGCTCGAAAAGAAGCGGGCGAAGGCACCTG
AACAGCCCACTCCCCCCATTCAGGAAGAGCCTGAGCCTGTCAGCAATGTCTTACAAGGAGATGACATTCT
TGCCTTGGCCATTAAAAAGGAAGACTTGAGGAAGCAACATGTTCCTCAGTTTGAAGAAACAGGAGAAAAG
CCTGTGGTCACACAGAAATTTATCATCCGTAAGCTCAAACCGAAAGACTCTAGCAAAAGGGTCTACCACT
TGGTAGCACATCCTGCTACTCCAGATGCCGCCACCAAGCCTCTGGACTACTCCGGTCCTCATGACAGCTT
CTTAAGCAGTGGCCAGATCCTCCCTCACCAGATCTTGGGAAGTCTCCAGGACTTTAAAAGAATCGCGGTT
GCTCGAGGGAACACCCAGCTGGCTAAGCTGATTCACATCCAGCCCTGCCTGATGACCCTCATCTCAGCCA
AAGAAGAGCCAAAGCCAAAGCCCCCCAAGGAGGAGGAGAGACCTTCTCCATGGGCCCCACCTCCTCAGCA
CAACTTCCTAAAGAACTGGAGACGGCACATTGCCTTGCGGAAGAAGCAACAGGAAGCTCTCAGCAAGCAC
CTGAAGAAGCCAGCCAGTGAGCTGTTGATGCATACCGGGGAGAGCTATAGGAAGATCCAGGAGGAGCGCG
AGGTCATTGACCGTGCACTTCCCACCCAGCATGACGGAAAAGCAACCAGTTGGTTCTGGAGTCCACTGGA
ATACCTGGGTGATGAGATGACAGGTCTTCTCATGACCAAAAAGAAAACTCAGCGTGGTCTGGTGGAACCC
ATCACACACATCAGGAAGCCCCTCTCCATCCAAGTGGAGACTGGATTACCAGCCCAGAAGGATGCTTGGT
ACCGCTACACCTGGGACCGGAGTCTGTTTCTGATCTACCGACGCAAGGAGCTGCAGAGTATCATGGCAGA
GCTGGATTTCAGCCAGCAGGATATTGATGGCCTGGAGGTGGTGGGCCATGGGAAGCCCTTCTCATCTGTC
ACAGTGGAAGAACATTTGCCACCTGAAAAGATCCAGAAGAGCTCCTCGGAAGACACGGTATTTCTAGACT
CCTTGACCAACCTCTCCGACATGGTCCCCATGCCTATTCTCGGCCCTTCGCTGCTGTTCTGTGGGAAGCC
AGCTTGCTGGGTCAGAGGCAGTAACCCAGAGGACAAGAAAAACATCGGAATTGGTGTCCGCCTGACATTT
GAAACCCTTGAAGGGGAGAGAACGTCCTCAGAACTGACTGTGGTCAATAACGGCACGGTGGCCATTTGGT
ACAACTGGCGAAGGCGGCCCCACCAGGATTTTTTCCAAGACCTAAAGCAAAACAAGACGCAGAGGTTTTA
CTTTAACAACCGGGAAGGTGTGATTCTGCCCGGGGAAACCAAACACTTTACCTTCTTCTTCAAGTCTCTG
AATGCTGGCATCTTCAGGGAATCTTGGGAGTTTGGGACCCACCCTACACTCCTGGGAGGTGCTGTCCTTC
AGGTCACCCTCCATGCCATCTCACTGACCCAGGACATTTTTATGGATGAGAGGAAGTTGTTGGAGACAAA
GCTGGCTGCCCACGAGGCCATCACCATTGCCCAGAGCGTGCTGCAGGACTTACTGAGGGGCATCTCCACG
CCAGAGCGCACACCATCCCCGGTGGACGCGTATCTCACCGAGGAGGACTTGTTCAACTACAGGAATCCTA
GGTTGCATTACCAGCATCAAGTGGTGCAAAACTTGCACCAGCTGTGGCAACAGTACAGGAAGGCCAAGGC
AACCCAGAAGGAAACCCCCAGCCTCAGAACTCCAGTGCCGTTACTGTTGGTGGAGAAGGCCTCAGGTTCG
ATAAGCCCCAGGAACCTGGTCTCAGAGTACTCGCAGCTGTCACCGCATCAGGAGATGGACACCGCCAGGA
AGACTCGGGACTTCTTCCTGTCTCTGAAGTCTAGCATAGGAAAGAAGAGTGTGGCACGGAAGAGCATTAT
GGAGGAACTGCTGGTGGAGGAGGGTCCGGACAGGGAGACCACCCAGCGCCCCTGGGCTCTGAAAAGCATT
TCCCCGCCTAAGTGGAACCTGTGTCTAGAGGACTTCAGACAGGCAGTGATGACCTTCCCCGAGGAGCTCC
AGAGAGAGGATGCCCTCATCCAGCTCAATAAGGCGGCAATGGAGCTGTGTCAGGAGCAGAAGCCACTGCA
GTCGGACCTCCTATACCAGATGTGTCTGCAGCTGTGGCGAGACGTGATTGACAGCCTGGTAAGCCAGTCC
CTGTGGCTAAGAAATCTTCTGGGCCTGCCTGAGAAGGAGACGGTTTATTTGGATCTTCCAGATGAACAAG
GTCAAAAATCCCCTCCAGTCACAGAGTCGAAGGTGACAAGTGGGAAAGCTGGGAAGGAGGATCGGAGAGG
GGGCGCACAGGAGAAGAAACAACTGGGTACCAAAGACAAAGATGATAAAAGGGGTTCCAAGACACCAGGG
AAAGAGGACCGCCCGAATAGCAAAAAACTGAAGCCAAAAGATGACAAGAAAGTGGTAAAGTCTGCAAGCC
GGGACAGGCTGCTCTCAGAAGATCCTCCCCCTGACAGCACGGCACCCTCCCAGGAGCCCATAGACCCCCT
GGTCATGGAGAAATATACCCAGCGGTTGCACGCTGAGGTCTATGCGTTGCTGGACAACCTGGTGACAGAT
GTGATGGTCCTGGCTGATGAGCTCAGCTCTACAAAGAATGTTGAAGAGTCTTTACGTTTTTGCAGCTGA

Translation (932 aa):
MMKKITERQSPLKLLEKKRAKAPEQPTPPIQEEPEPVSNVLQGDDILALAIKKEDLRKQHVPQFEETGEK
PVVTQKFIIRKLKPKDSSKRVYHLVAHPATPDAATKPLDYSGPHDSFLSSGQILPHQILGSLQDFKRIAV
ARGNTQLAKLIHIQPCLMTLISAKEEPKPKPPKEEERPSPWAPPPQHNFLKNWRRHIALRKKQQEALSKH
LKKPASELLMHTGESYRKIQEEREVIDRALPTQHDGKATSWFWSPLEYLGDEMTGLLMTKKKTQRGLVEP
ITHIRKPLSIQVETGLPAQKDAWYRYTWDRSLFLIYRRKELQSIMAELDFSQQDIDGLEVVGHGKPFSSV
TVEEHLPPEKIQKSSSEDTVFLDSLTNLSDMVPMPILGPSLLFCGKPACWVRGSNPEDKKNIGIGVRLTF
ETLEGERTSSELTVVNNGTVAIWYNWRRRPHQDFFQDLKQNKTQRFYFNNREGVILPGETKHFTFFFKSL
NAGIFRESWEFGTHPTLLGGAVLQVTLHAISLTQDIFMDERKLLETKLAAHEAITIAQSVLQDLLRGIST
PERTPSPVDAYLTEEDLFNYRNPRLHYQHQVVQNLHQLWQQYRKAKATQKETPSLRTPVPLLLVEKASGS
ISPRNLVSEYSQLSPHQEMDTARKTRDFFLSLKSSIGKKSVARKSIMEELLVEEGPDRETTQRPWALKSI
SPPKWNLCLEDFRQAVMTFPEELQREDALIQLNKAAMELCQEQKPLQSDLLYQMCLQLWRDVIDSLVSQS
LWLRNLLGLPEKETVYLDLPDEQGQKSPPVTESKVTSGKAGKEDRRGGAQEKKQLGTKDKDDKRGSKTPG
KEDRPNSKKLKPKDDKKVVKSASRDRLLSEDPPPDSTAPSQEPIDPLVMEKYTQRLHAEVYALLDNLVTD
VMVLADELSSTKNVEESLRFCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH