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Report for CCDS48872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48872.1 Public Mus musculus 11 Chct1 23 108 98 CCDS HistoryNCBI Gene:73634Re-query CCDS DB by CCDS ID:48872.1Re-query CCDS DB by GeneID:73634See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018623.3 ENSMUSP00000018623.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018623.3Link to Ensembl Protein Viewer:ENSMUSP00000018623.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018623Re-query CCDS DB by Protein ID:ENSMUSP00000018623
Original member Current member NCBI NM_028589.1 NP_082865.1 Accepted alive Link to Nucleotide Sequence:NM_028589.1Link to Protein Sequence:NP_082865.1Re-query CCDS DB by Nucleotide ID:NM_028589Re-query CCDS DB by Protein ID:NP_082865Link to BLAST:NP_082865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082865.1 236 Q9D979-1 236 100% 0 0

Chromosomal Locations for CCDS 48872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85171177 85171227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85172834 85172935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85173188 85173363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85174017 85174116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85178257 85178452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85180886 85180971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGAAGCCTCAGATTGGCAAGGGGGTGAAGGAGACAAGCCACTAGAGAAGGTGGGGAGCGTTCCCTGTT
TAGAGAGGAGCTCCAGCACCGTGCCCACGGGAGATGCTCTGGTCCGTCATGCCAAGGGCCTGAGCCAGGA
TACCTTCAAAATTTGTAAAGAATACCTGAGGCCTCTGAAGAAGTTCCTTCGAAAGTTGAACCTGCCCAAG
GACCTTCCCCAGAAGAAAAGGATAAAGTATACGAAGCAGAGCCTTGAGGCCCTAGGGGGCCATATTAACA
CCTTTCTGCAGCATTATTGCCGAGCCTGGGAGATCAAGCACTGGAAAAAAATGCTGTGGCGGTTTGTCTC
CCTCTTCTCAGAGCTGGAAGCAAAGCAGCTTCGTCGGCTCTATAAGTACACCAAGACGAACCAGACGGCC
AAGTTCCTGGCCGCACTCTGCCCCTTGGATGCACCGGAGAGATCACTGCTTGCCAACCAAGAGGACTGTC
TTCCCAGGCTCTGCAGTGCCTGGGGCTTGCATGGAAATATCAGCGGCATGAAGGAGAGGTTGTCCAAGAT
GCAAGCCCCTGGCCAAGAAGTTGTCATGCTGGAGGAGCCAAGGTCCTCACACTGCTCCAGAGGAGATTCT
TTAAGGAAACTTCCTCAAAAACCAAAGCTGAAGAAAAAGAGGATTAAGGAAAGACTAGAATCTCCCAAGA
GCTGCTCCTAA

Translation (236 aa):
MEASDWQGGEGDKPLEKVGSVPCLERSSSTVPTGDALVRHAKGLSQDTFKICKEYLRPLKKFLRKLNLPK
DLPQKKRIKYTKQSLEALGGHINTFLQHYCRAWEIKHWKKMLWRFVSLFSELEAKQLRRLYKYTKTNQTA
KFLAALCPLDAPERSLLANQEDCLPRLCSAWGLHGNISGMKERLSKMQAPGQEVVMLEEPRSSHCSRGDS
LRKLPQKPKLKKKRIKERLESPKSCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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