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Report for CCDS48869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48869.1 Public Mus musculus 11 Slfn8 23 108 98 CCDS HistoryNCBI Gene:276950Re-query CCDS DB by CCDS ID:48869.1Re-query CCDS DB by GeneID:276950See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108152.8 ENSMUSP00000103787.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108152.8Link to Ensembl Protein Viewer:ENSMUSP00000103787.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108152Re-query CCDS DB by Protein ID:ENSMUSP00000103787
Original member Current member EBI ENSMUST00000215239.1 ENSMUSP00000149800.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215239.1Link to Ensembl Protein Viewer:ENSMUSP00000149800.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215239Re-query CCDS DB by Protein ID:ENSMUSP00000149800
Original member Current member NCBI NM_001167743.1 NP_001161215.1 Accepted alive Link to Nucleotide Sequence:NM_001167743.1Link to Protein Sequence:NP_001161215.1Re-query CCDS DB by Nucleotide ID:NM_001167743Re-query CCDS DB by Protein ID:NP_001161215Link to BLAST:NP_001161215.1

Chromosomal Locations for CCDS 48869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83003864 83003889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83013365 83013499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83016653 83017715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGAGACACATCCCTCCTTAGCAGTGAAATGGTCGTGCCCAGACTTGACCATCTACGCAGGAGAAGTGA
CTATCGGAGAAGAAGATAGAAATAAAATGGACTCAAAGAAAAGAAAGCTGGAGAAGACAAGAATTACAGA
GGCTGCTTGTGCTCTGTTAAACTCTGGAGGAGGATTAATTGCTATGCAAATGACTAACAAGAGTGAGCAT
CCTGTGGAGATGGGACAGGACTTGGAAAAGTCTTTGAGAGAGCTTATTATGTCCCCTAATATGCAGGCTT
TCTTTGAGACCAAGCAACAAGAGGACCAGTTCTACATTTTTGTTAAATCTTGGAGCTGCAGGCCTGAAGA
TGGTTCTACTAAGCCTCGAATTTGCAGCCTGGGCTCTTCTCTGTACTGTAGATCTATAACTTCTAAGGTT
GCCATGGATTCAAGAGAAGCATTTGAATTTCTGAAAGATAAGAAGGCATGTATCAAATACAGGCCTACTG
ATGACGGAGCTCCACCGGCTAAAATTCCGAGAGCCATGTGTCAGAACAGCCTTGAATCAAATCCAGCTTT
TGAAATTTTCCAAAGTAAGAAACTTGAATATGGCCAATGCTTGCTTTTCTCTGAATCCACATCTATAGAG
TTTAAACAATTCTCTACCAAACACGTCCAAGCATATATGAAAAACATAATTCCAGAATACATCTCCGCAT
TTGCAAACACCCAGGGAGGCTATCTTTTCATTGGAGTGGATGATAAGAGAATCATCTTGGGATGCCCAAA
AGACAACGTTGACCGTGACTCTTTGAAAACTGTGGCGAATGAAACAATATCCAAGGTGCCAGTTTTCCAT
TTTTGTTCATCTAAAGACAAGGACAAGGTGTCTTATGAGACCAGAGTCATAGATGTGTTTCAAGAGGGAA
ATTTGTATGGTTATCTCTGTGTGATCAAAGTAGAGCCGTTCTGCTGTGCAGTGTTCTCAGAGGCTCCCAT
TTCATGGATGGTAGACAAGGAGAAAGGTGTCTACAGACTGAACACTGAGGAATGGGTACGCATGATGGTG
GATTTTGGCCCAGAGGCATCTTCCAAAGATCTATCTAAAGATTTTGAATGTCAGCTGAGTCTATGCAACA
GCCCCCCACACTGCAGACCAGTGTATTCTAAAAAAGGACTGCAGCATAAAGTTGACCTGCAGCAGCGTTT
ATTTCAAGGGCAAAAAGAATCTGCCAGGCAGTGA

Translation (407 aa):
METHPSLAVKWSCPDLTIYAGEVTIGEEDRNKMDSKKRKLEKTRITEAACALLNSGGGLIAMQMTNKSEH
PVEMGQDLEKSLRELIMSPNMQAFFETKQQEDQFYIFVKSWSCRPEDGSTKPRICSLGSSLYCRSITSKV
AMDSREAFEFLKDKKACIKYRPTDDGAPPAKIPRAMCQNSLESNPAFEIFQSKKLEYGQCLLFSESTSIE
FKQFSTKHVQAYMKNIIPEYISAFANTQGGYLFIGVDDKRIILGCPKDNVDRDSLKTVANETISKVPVFH
FCSSKDKDKVSYETRVIDVFQEGNLYGYLCVIKVEPFCCAVFSEAPISWMVDKEKGVYRLNTEEWVRMMV
DFGPEASSKDLSKDFECQLSLCNSPPHCRPVYSKKGLQHKVDLQQRLFQGQKESARQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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