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Report for CCDS48864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48864.1 Public Mus musculus 11 Zfp207 23 108 98 CCDS HistoryNCBI Gene:22680Re-query CCDS DB by CCDS ID:48864.1Re-query CCDS DB by GeneID:22680See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48864.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017567.13 ENSMUSP00000017567.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017567.13Link to Ensembl Protein Viewer:ENSMUSP00000017567.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000017567Re-query CCDS DB by Protein ID:ENSMUSP00000017567
Original member Current member EBI ENSMUST00000178665.7 ENSMUSP00000136727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178665.7Link to Ensembl Protein Viewer:ENSMUSP00000136727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178665Re-query CCDS DB by Protein ID:ENSMUSP00000136727
Original member Current member EBI ENSMUST00000188489.6 ENSMUSP00000139653.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188489.6Link to Ensembl Protein Viewer:ENSMUSP00000139653.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188489Re-query CCDS DB by Protein ID:ENSMUSP00000139653
Original member Current member NCBI NM_001130171.1 NP_001123643.1 Accepted alive Link to Nucleotide Sequence:NM_001130171.1Link to Protein Sequence:NP_001123643.1Re-query CCDS DB by Nucleotide ID:NM_001130171Re-query CCDS DB by Protein ID:NP_001123643Link to BLAST:NP_001123643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123643.1 464 Q9JMD0-3 464 100% 0 0

Chromosomal Locations for CCDS 48864.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80383455 80383495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80385903 80386029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80387802 80387940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80388978 80389145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80389255 80389330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80389774 80389821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80391331 80391401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80391835 80391992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80394286 80394531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80395102 80395261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80395390 80395550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGGTCGCAAGAAGAAGAAGCAGCTCAAGCCGTGGTGCTGGTATTGTAACAGAGATTTTGATGATGAGA
AGATCCTTATACAGCACCAAAAAGCAAAGCATTTTAAATGCCATATTTGTCATAAGAAATTATACACAGG
ACCTGGTTTAGCAATTCATTGCATGCAGGTCCATAAAGAAACCATAGATGCAGTACCAAATGCAATACCT
GGGAGAACAGACATAGAGTTGGAAATATATGGCATGGAAGGTATTCCAGAGAAAGATATGGATGAAAGAC
GGCGACTTCTTGAACAGAAAACACAAGAGAGTCAGAAAAAGAAACAACAAGATGATTCTGATGAATATGA
TGATGATGAATCTGCAGCCTCAACTTCCTTTCAGCCACAGCCTGTTCAACCTCAGCAAGGTTATATCCCA
CCAATGGCTCAGCCAGGACTGCCTCCAGTTCCAGGGGCACCAGGAATGCCTCCAGGCATACCTCCATTGA
TGCCAGGTGTTCCTCCCCTGATGCCAGGCATGCCTCCAGTGATGCCAGGAATGCCGCCTGGATTGCATCA
TCAGAGAAAATACACCCAGTCATTTTGCGGTGAAAACATAATGATGCCAATGGGTGGAATGATGCCACCT
GGACCTGGAATACCACCTCTGATGCCAGGTATGCCACCAGGTATGCCCCCACCTGTTCCACGTCCTGGAA
TTCCTCCAATGACTCAAGCACAGGCTGTTTCAGCACCAGGTATTCTTAATAGACCACCTGCACCAACAGC
AGCAGTACCTGCTCCACAGCCTCCAGTTACTAAGCCTCTTTTCCCCAGTGCTGGACAGGCTCAGGCAGCT
GTCCAAGGACCTGTTGGTACAGATTTTAAGCCCTTAAATAGTACTCCTGCAGCAACAACTACAGAACCCC
CAAAGCCTACATTCCCTGCTTATACACAGTCTACAGCGTCAACCACTAGTACAACAAACAGTACTGCAGC
AAAGCCAGCAGCTTCAATAACAAGTAAGCCTGCTACACTCACAACCACCAGTGCAACCAGTAAGTTGATC
CATCCAGATGAGGATATATCACTGGAAGAAAGAAGGGCACAGTTACCTAAATATCAGAGAAATCTTCCTC
GACCAGGACAAACTCCAATTGGTAATCCACCAGTTGGACCAATTGGGGGTATGATGCCACCACAGCCAGG
CCTGCCACAGCAGCAGGCAATGCGACCTCCAATGCCACCTCATGGTCAGTATGGTGGTCATCATCAAGGC
ATGCCAGGTTATCTTCCTGGCGCTATGCCACCGTATGGACAGGGACCACCAATGGTGCCCCCTTACCAAG
GTGGGCCTCCTCGACCTCCAATGGGAATGAGACCTCCTGTAATGTCGCAAGGTGGCCGTTACTGA

Translation (464 aa):
MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIP
GRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDESAASTSFQPQPVQPQQGYIP
PMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPP
GPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTAAVPAPQPPVTKPLFPSAGQAQAA
VQGPVGTDFKPLNSTPAATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLI
HPDEDISLEERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPPQPGLPQQQAMRPPMPPHGQYGGHHQG
MPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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