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Report for CCDS48542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48542.1 Public Mus musculus 10 Mfsd4b5 23 108 98 CCDS HistoryNCBI Gene:215928Re-query CCDS DB by CCDS ID:48542.1Re-query CCDS DB by GeneID:215928See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170579.8 ENSMUSP00000126439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170579.8Link to Ensembl Protein Viewer:ENSMUSP00000126439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170579Re-query CCDS DB by Protein ID:ENSMUSP00000126439
Original member Current member NCBI NM_001113385.1 NP_001106856.1 Accepted alive Link to Nucleotide Sequence:NM_001113385.1Link to Protein Sequence:NP_001106856.1Re-query CCDS DB by Nucleotide ID:NM_001113385Re-query CCDS DB by Protein ID:NP_001106856Link to BLAST:NP_001106856.1

Chromosomal Locations for CCDS 48542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 39970143 39971152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39973592 39973708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39975098 39975266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39986382 39986525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGGGTCCCGTGGGTCCGGGCCCACGTCTGTTGAGCAGCACCTCCTCCAGGTTGAGACCCAAGGGAAGA
ACGGGCTCCAGGCTGTGGGAAGAACACTGCGCTGGTTCACCACTGTGGTTCTGAACGCTGCTTTCCTGGG
GATGGGAGTGAGTGCTGCTGTGCTGGGACCCACATTTCCGGACCTGGCAAGAAATGTGAACCGGAACGTC
AGCAGCCTTTCAGAAATCTTCGTGGGCCGAGCCCTCGGCTACTTGTGCGGCTCTGTGGTTGGTGGAGTGC
TTTTCGACTGCATGAATCATTTTCTACTTTTGGGGCTGTCCAACCTGCTCACCATAGCCGGTCTTTACCT
CACTCCTTTCTGTAAAACAGCGGCCTTACTGACTACCATGATGTCTGTTACCGGTGTCTCCTTTGGTGTT
CTGGATACAGGTGGAAACGTCCTCATCTTGGATCTCTGGGGGGACAAAGGAGCCCCACATATGCAGGCCT
TGCACTTCAGTTTCGCCTTGGGTGCCTTTCTGGCTCCCCTGCTGGCTAAGTTGGCCTGGGGTACAACAAC
ATCTGCTCAGAACTACACAGAACCCCAATCAGACCGTTCAGCCTTGAACCAATCCTTTGAAGCCACCTTA
GACTCGGTGTTCGCGGTACCCGATGACAAGAATCTGCTGTGGACATATGCTTCTATTGGCACCTATGTTT
TAGTAGTTTCTGTCTTTCTGTTTGCTCCATTCTTTAAGAAAAACTCAAAACAGAAAAAATCCGAGGCATC
TGCTCAGGGAGCTCGAAGGGCTAAATATCACAGGGCCCTGCTATGCCTGCTCTTCCTCTTCTTCTTCTTC
TATGTGGGAGCTGAGGTGACCTACGGCTCTTTCGTATTCTCCTTTGCTATCACCCATGTTGGCATGGAAG
AGAGCGAGGCAGCTGGCTTGAACTCCATCTTCTGGGGAACCTTTGCAGCCTGCAGGGGCCTGGCCATCTT
CTTTGCAACATTCTTACAGCCTGGAACCATGATTGTGTTGTGTAACATTGGCAGCCTGGTCTCATGTTTC
TTTCTGGTGCTTTTTGACAAGAGCCCTCTTTGTCTTTGGATTGCGACTTCTGTGTATGGAGCCTCAATGG
CAGCCACGTTTCCCAGCAGCATCTCCTGGATTGAGCAGTATACCAGCATAAATGGGAAATCTGCAGCATT
TATTTTGATTGGCGCTGCCCTGGGACTAATGGCAACTCCTGCACTATCTGGAATTCTTCAAGGCCACTAT
CCAGATCTCCCAGTAGTTCTGTATACTTGTTTGGGCTCAGCAGTATTAACGACTGTTTTATTCCCTGTGA
TGTATAAAGTAGCCACCTTACCTCTGGATCAAAAGCAGGAGAAAAGCATCAACAGTGAGGGCCAGAAAAC
TTTACTTTCTAGCTTTAGGCTAATCAAGGAAGCTAAATGA

Translation (479 aa):
MGSRGSGPTSVEQHLLQVETQGKNGLQAVGRTLRWFTTVVLNAAFLGMGVSAAVLGPTFPDLARNVNRNV
SSLSEIFVGRALGYLCGSVVGGVLFDCMNHFLLLGLSNLLTIAGLYLTPFCKTAALLTTMMSVTGVSFGV
LDTGGNVLILDLWGDKGAPHMQALHFSFALGAFLAPLLAKLAWGTTTSAQNYTEPQSDRSALNQSFEATL
DSVFAVPDDKNLLWTYASIGTYVLVVSVFLFAPFFKKNSKQKKSEASAQGARRAKYHRALLCLLFLFFFF
YVGAEVTYGSFVFSFAITHVGMEESEAAGLNSIFWGTFAACRGLAIFFATFLQPGTMIVLCNIGSLVSCF
FLVLFDKSPLCLWIATSVYGASMAATFPSSISWIEQYTSINGKSAAFILIGAALGLMATPALSGILQGHY
PDLPVVLYTCLGSAVLTTVLFPVMYKVATLPLDQKQEKSINSEGQKTLLSSFRLIKEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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