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Report for CCDS48474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48474.1 Public Mus musculus 1 Enah 23 108 98 CCDS HistoryNCBI Gene:13800Re-query CCDS DB by CCDS ID:48474.1Re-query CCDS DB by GeneID:13800See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111030.5 ENSMUSP00000106659.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111030.5Link to Ensembl Protein Viewer:ENSMUSP00000106659.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111030Re-query CCDS DB by Protein ID:ENSMUSP00000106659
Original member NCBI NM_008680.3 NP_032706.2 Updated not alive Link to Nucleotide Sequence:NM_008680.3Link to Protein Sequence:NP_032706.2Re-query CCDS DB by Nucleotide ID:NM_008680Re-query CCDS DB by Protein ID:NP_032706
Current member NCBI NM_008680.4 NP_032706.2 Accepted alive Link to Nucleotide Sequence:NM_008680.4Link to Protein Sequence:NP_032706.2Re-query CCDS DB by Nucleotide ID:NM_008680Re-query CCDS DB by Protein ID:NP_032706Link to BLAST:NP_032706.2

Chromosomal Locations for CCDS 48474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181905860 181905897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181906387 181906444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181908298 181908376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181913307 181913373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181917199 181917247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181918258 181918315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181918438 181918583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181919325 181919629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181921658 181922500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181923560 181923840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181930678 181930762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181931174 181931185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181956394 181956571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181961754 181961919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182019530 182019534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGAGTGAACAGAGTATCTGTCAGGCAAGAGCTGCTGTGATGGTCTATGATGATGCCAATAAGAAGTGGG
TGCCAGCTGGTGGCTCAACTGGGTTCAGCAGAGTACATATATATCACCATACAGGCAACAACACATTCAG
AGTTGTGGGCAGAAAGATTCAAGACCATCAGGTTGTGATAAACTGTGCCATTCCTAAAGGGCTGAAGTAC
AATCAAGCTACACAGACTTTCCACCAATGGAGGGATGCTAGACAGGTGTATGGTCTCAACTTTGGCAGCA
AAGAGGATGCCAATGTCTTCGCAAGTGCCATGATGCATGCCTTAGAAGTGTTAAATTCACAGGAAGCAGT
GTTCTATTTAGGGCCAACATTGCCTAGACAAAATTCACAGCTACCTGCTCAAGTTCAAAATGGCCCATCC
CAAGAAGAGCTGGAAATCCAGAGAAGGCAACTGCAAGAACAGCAGCGACAGAAGGAACTGGAGAGGGAAA
GAATGGAGAGGGAAAGGTTGGAGAGAGAACGACTAGAACGAGAGAGGCTAGAGAGGGAGCGCCTGGAACA
AGAGCAGCTGGAGCGGCAGCGGCAGGAAAGGGAGCACGTGGAGCGGCTGGAGAGGGAGAGGCTGGAGCGC
CTGGAGCGAGAGAGGCAGGAGCGGGAGCGAGAGCGCCTGGAGCAGCTGGAGCGGGAGCAAGTGGAGTGGG
AGCGAGAGCGCAGAATGTCCAATGCTGCTCCATCTTCAGACAGCTCCCTGTCTAGTGCTCCACTTCCTGA
GTATTCCAGTTGCCAGCCGCCTTCGGCACCTCCTCCATCATATGCTAAAGTCATCTCAGCTCCGGTGTCA
GACGCCACTCCTGATTACGCTGTAGTGACTGCTTTGCCACCTACTTCCACACCCCCTACACCACCACTGA
GACACGCAGCGACACGTTTTGCAACATCTCTAGGTTCAGCCTTCCACCCTGTTCTTCCCCATTACGCTAC
AGTTCCTCGTCCTCTCAACAAAAACTCTCGACCTTCTTCTCCTGTGAACACACCCTCTTCTCAGCCTCCA
GCTGCGAAGTCCTGTGCCTGGCCTACTTCCAATTTCTCGCCCCTCCCTCCATCTCCTCCAATAATGATTA
GCAGCCCCCCTGGCAAAGCTACTGGCCCACGGCCTGTCCTTCCCGTTTGTGTCTCCTCTCCTGTGCCCCA
AATGCCTCCGTCACCAACAGCACCCAATGGGTCGCTAGACTCTGTAACATACCCAGTGTCTCCACCGCCT
ACCTCAGGGCCAGCAGCGCCACCTCCGCCGCCACCGCCACCGCCACCGCCGCCGCCACCACCACCGCCGC
TGCCACCGCCGCCGCTGCCTCCCCTCGCCTCACTCTCACACTGTGGATCACAGGCTTCTCCTCCTCCAGG
CACCCCTCTTGCCTCAACTCCCTCATCCAAGCCCAGTGTTCTCCCTTCTCCCTCTGCAGCTGCCCCTGCC
TCTGCGGAGACCCCTCTAAATCCTGAGCTGGGAGACTCCTCTGCTTCCGAGCCAGGCTTGCAGGCAGCCT
CTCAGCCGGCCGAGTCGCCAACCCCACAGGGCCTTGTCTTGGGACCACCTGCACCTCCGCCACCACCCCC
TCTCCCATCAGGCCCTGCCTACGCCTCAGCACTTCCTCCTCCCCCAGGACCCCCTCCACCACCTCCACTG
CCATCCACTGGTCCTCCTCCTCCACCCCCTCCACCACCCCCTCTTCCTAATCAAGCTCCTCCCCCTCCTC
CCCCACCTCCTGCCCCTCCCCTCCCCGCATCTGGAATTTTCTCTGGATCCACGTCAGAAGACAATCGCCC
TTTAACTGGACTTGCAGCTGCAATTGCGGGAGCAAAACTTAGGAAAGTGTCCCGGGTGGAGGATGGCTCT
TTCCCAGGTGGAGGGAATACTGGGAGTGTGAGCTTGGCCTCATCCAAAGCAGACGCTGGGCGTGGGAATG
GACCTCTTCCTCTAGGGGGTAGTGGCTTAATGGAAGAAATGAGTGCCCTGCTGGCCAGGAGGAGAAGAAT
TGCTGAGAAGGGATCAACAATAGAAACAGAACAAAAGGAAGACAGAAATGAAGATGCAGAGCCTATAACT
GCTAAGGCCCCATCAACAAGTACACCTGAACCAACCAGAAAACCTTGGGAAAGAACAAACACAATGAACG
GCAGTAAGTCACCTGTCATCTCCAGACCCAAATCCACACCTTCATCACAGCCAAGTGCCAATGGAGTCCA
GACAGAAGGCCTTGACTATGACAGGCTGAAGCAGGACATTTTAGATGAGATGAGAAAAGAGCTGGCAAAG
CTGAAGGAGGAGCTTATTGACGCAATCAGGCAGGAGCTGAGCAAGTCGAACACTGCATAA

Translation (789 aa):
MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKY
NQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAVFYLGPTLPRQNSQLPAQVQNGPS
QEELEIQRRQLQEQQRQKELERERMERERLERERLERERLERERLEQEQLERQRQEREHVERLERERLER
LERERQERERERLEQLEREQVEWERERRMSNAAPSSDSSLSSAPLPEYSSCQPPSAPPPSYAKVISAPVS
DATPDYAVVTALPPTSTPPTPPLRHAATRFATSLGSAFHPVLPHYATVPRPLNKNSRPSSPVNTPSSQPP
AAKSCAWPTSNFSPLPPSPPIMISSPPGKATGPRPVLPVCVSSPVPQMPPSPTAPNGSLDSVTYPVSPPP
TSGPAAPPPPPPPPPPPPPPPPPLPPPPLPPLASLSHCGSQASPPPGTPLASTPSSKPSVLPSPSAAAPA
SAETPLNPELGDSSASEPGLQAASQPAESPTPQGLVLGPPAPPPPPPLPSGPAYASALPPPPGPPPPPPL
PSTGPPPPPPPPPPLPNQAPPPPPPPPAPPLPASGIFSGSTSEDNRPLTGLAAAIAGAKLRKVSRVEDGS
FPGGGNTGSVSLASSKADAGRGNGPLPLGGSGLMEEMSALLARRRRIAEKGSTIETEQKEDRNEDAEPIT
AKAPSTSTPEPTRKPWERTNTMNGSKSPVISRPKSTPSSQPSANGVQTEGLDYDRLKQDILDEMRKELAK
LKEELIDAIRQELSKSNTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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