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Report for CCDS47836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47836.1 Public Homo sapiens 8 NRG1 24 110 108 CCDS HistoryNCBI Gene:3084Re-query CCDS DB by CCDS ID:47836.1Re-query CCDS DB by GeneID:3084See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47836.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520407.5 ENSP00000434640.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520407.5Link to Ensembl Protein Viewer:ENSP00000434640.1Re-query CCDS DB by Nucleotide ID:ENST00000520407Re-query CCDS DB by Protein ID:ENSP00000434640
Original member Current member NCBI NM_013962.3 NP_039256.2 Accepted alive Link to Nucleotide Sequence:NM_013962.3Link to Protein Sequence:NP_039256.2Re-query CCDS DB by Nucleotide ID:NM_013962Re-query CCDS DB by Protein ID:NP_039256Link to BLAST:NP_039256.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_039256.2 422 Q02297-9 422 100% 0 0

Chromosomal Locations for CCDS 47836.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31639985 31640729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32595828 32596005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32605562 32605683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32727949 32728078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32742675 32742768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGAGATGGCGACGCGCCCCGCGCCGCTCCGGGCGTCCCGGCCCCCGGGCCCAGCGCCCCGGCTCCGCCG
CC
CGCTCGTCGCCGCCGCTGCCGCTGCTGCCACTACTGCTGCTGCTGGGGACCGCGGCCCTGGCGCCGGG
G
GCGGCGGCCGGCAACGAGGCGGCTCCCGCGGGGGCCTCGGTGTGCTACTCGTCCCCGCCCAGCGTGGGA
TCG
GTGCAGGAGCTAGCTCAGCGCGCCGCGGTGGTGATCGAGGGAAAGGTGCACCCGCAGCGGCGGCAGC
AG
GGGGCACTCGACAGGAAGGCGGCGGCGGCGGCGGGCGAGGCAGGGGCGTGGGGCGGCGATCGCGAGCC
G
CCAGCCGCGGGCCCACGGGCGCTGGGGCCGCCCGCCGAGGAGCCGCTGCTCGCCGCCAACGGGACCGTG
CCC
TCTTGGCCCACCGCCCCGGTGCCCAGCGCCGGCGAGCCCGGGGAGGAGGCGCCCTATCTGGTGAAGG
TG
CACCAGGTGTGGGCGGTGAAAGCCGGGGGCTTGAAGAAGGACTCGCTGCTCACCGTGCGCCTGGGGAC
C
TGGGGCCACCCCGCCTTCCCCTCCTGCGGGAGGCTCAAGGAGGACAGCAGGTACATCTTCTTCATGGAG
CCC
GACGCCAACAGCACCAGCCGCGCGCCGGCCGCCTTCCGAGCCTCTTTCCCCCCTCTGGAGACGGGCC
GG
AACCTCAAGAAGGAGGTCAGCCGGGTGCTGTGCAAGCGGTGCGCCTTGCCTCCCCGATTGAAAGAGAT
G
AAAAGCCAGGAATCGGCTGCAGGTTCCAAACTAGTCCTTCGGTGTGAAACCAGTTCTGAATACTCCTCT
CTC
AGATTCAAGTGGTTCAAGAATGGGAATGAATTGAATCGAAAAAACAAACCACAAAATATCAAGATAC
AA
AAAAAGCCAGGGAAGTCAGAACTTCGCATTAACAAAGCATCACTGGCTGATTCTGGAGAGTATATGTG
C
AAAGTGATCAGCAAATTAGGAAATGACAGTGCCTCTGCCAATATCACCATCGTGGAATCAAACGCTACA
TCT
ACATCCACCACTGGGACAAGCCATCTTGTAAAATGTGCGGAGAAGGAGAAAACTTTCTGTGTGAATG
GA
GGGGAGTGCTTCATGGTGAAAGACCTTTCAAACCCCTCGAGATACTTGTGCAAGTGCCCAAATGAGTT
T
ACTGGTGATCGCTGCCAAAACTACGTAATGGCCAGCTTCTACAGTACGTCCACTCCCTTTCTGTCTCTG
CCT
GAATAG


Translation (422 aa):
MRWRRAPRRSGRPGPRAQRPGSAARSSPPLPLLPLLLLLGTAALAPGAAAGNEAAPAGASVCYSSPPSVG
S
VQELAQRAAVVIEGKVHPQRRQQGALDRKAAAAAGEAGAWGGDREPPAAGPRALGPPAEEPLLAANGTV
P
SWPTAPVPSAGEPGEEAPYLVKVHQVWAVKAGGLKKDSLLTVRLGTWGHPAFPSCGRLKEDSRYIFFME
P
DANSTSRAPAAFRASFPPLETGRNLKKEVSRVLCKRC
ALPPRLKEMKSQESAAGSKLVLRCETSSEYSS
L
RFKWFKNGNELNRKNKPQNIKIQKKP
GKSELRINKASLADSGEYMCKVISKLGNDSASANITIVESNAT
S
TSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLC
KCPNEFTGDRCQNYVMASFYSTSTPFLSL
P
E




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 Genome Browser Links:   Ensembl Genome Browser
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