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Report for CCDS47679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47679.1 Public Homo sapiens 7 DNAJC2 24 110 108 CCDS HistoryNCBI Gene:27000Re-query CCDS DB by CCDS ID:47679.1Re-query CCDS DB by GeneID:27000See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47679.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249270.11 ENSP00000249270.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000249270.11Link to Ensembl Protein Viewer:ENSP00000249270.7Re-query CCDS DB by Nucleotide ID:ENST00000249270Re-query CCDS DB by Protein ID:ENSP00000249270
Original member Current member NCBI NM_001129887.3 NP_001123359.1 Accepted alive Link to Nucleotide Sequence:NM_001129887.3Link to Protein Sequence:NP_001123359.1Re-query CCDS DB by Nucleotide ID:NM_001129887Re-query CCDS DB by Protein ID:NP_001123359Link to BLAST:NP_001123359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123359.1 568 Q99543-2 568 100% 0 0

Chromosomal Locations for CCDS 47679.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103312569 103312643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103312947 103313101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103315764 103315871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103315988 103316088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103316830 103317014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103321932 103322081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103322511 103322632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103322703 103322794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103323598 103323663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103324482 103324562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103326543 103326684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103327656 103327754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103337736 103337811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103341764 103341954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103344559 103344622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGCTGCTTCTGCCAAGCGCCGCGGACGGCCGGGGCACCGCCATCACCCACGCTCTGACCTCTGCCTCTA
CACTCTGTCAAGTTGAACCTGTGGGAAGATGGTTTGAAGCTTTTGTTAAGAGGAGAAACAGAAATGCTTC
TGCCTCTTTTCAGGAACTGGAGGATAAGAAAGAGTTATCCGAGGAATCAGAAGATGAAGAATTGCAGTTG
GAAGAGTTTCCCATGCTGAAAACACTTGATCCCAAAGACTGGAAGAACCAAGATCATTATGCAGTTCTTG
GACTTGGCCATGTGAGATACAAGGCTACACAGAGACAGATCAAAGCAGCTCATAAAGCAATGGTTTTAAA
ACATCACCCAGACAAACGGAAAGCAGCTGGTGAACCAATAAAAGAAGGAGATAATGACTACTTCACTTGC
ATAACTAAAGCTTATGAAATGTTATCTGATCCAGTGAAAAGACGAGCATTTAACAGTGTAGATCCTACTT
TTGATAACTCAGTTCCTTCTAAAAGTGAAGCAAAGGATAATTTCTTCGAAGTGTTTACCCCAGTGTTTGA
AAGGAATTCCAGATGGTCAAATAAAAAAAATGTTCCTAAACTTGGTGATATGAATTCATCATTTGAAGAT
GTAGATATATTTTATTCTTTCTGGTATAATTTTGATTCTTGGAGAGAATTTTCTTATTTAGATGAAGAAG
AAAAAGAAAAAGCAGAATGTCGTGATGAGAGGAGATGGATTGAAAAGCAGAACAGAGCAACAAGAGCACA
AAGAAAAAAAGAAGAAATGAACAGAATAAGAACATTAGTTGACAATGCATACAGCTGTGATCCAAGGATA
AAAAAGTTCAAGGAAGAAGAAAAAGCCAAGAAAGAAGCAGAAAAGAAAGCAAAAGCAGAAGCTAAACGGA
AGGAGCAAGAAGCTAAAGAAAAACAAAGACAAGCTGAATTAGAAGCTGCTCGGTTAGCTAAGGAGAAAGA
AGAGGAGGAAGTCAGACAGCAAGCATTGCTGGCAAAGAAGGAAAAAGATATCCAGAAAAAAGCCATTAAG
AAGGAAAGGCAAAAACTTCGAAACTCATGCAAGATAGAAGAAATAAATGAGCAAATCAGAAAAGAGAAAG
AGGAAGCTGAGGCTCGTATGCGACAAGCATCTAAGAACACAGAGAAATCAACTGGTGGAGGTGGAAATGG
AAGTAAAAATTGGTCAGAAGATGATCTACAATTACTAATTAAAGCTGTGAATCTGTTCCCTGCTGGAACA
AATTCAAGATGGGAAGTTATTGCTAATTACATGAACATACATTCTTCCTCTGGAGTCAAAAGAACTGCCA
AAGATGTTATTGGCAAAGCAAAGAGTCTCCAAAAACTTGACCCTCATCAAAAAGATGACATAAATAAAAA
GGCATTTGATAAGTTCAAAAAAGAACATGGAGTGGTACCTCAAGCAGACAACGCAACGCCTTCAGAACGA
TTTGAAGGTCCATATACAGACTTCACCCCTTGGACAACAGAAGAACAGAAGCTTTTGGAACAAGCTTTGA
AAACATACCCAGTAAATACACCTGAAAGATGGGAAAAAATAGCAGAAGCGGTGCCTGGCAGGACAAAGAA
GGACTGCATGAAACGATACAAGGAACTTGTCGAGATGGTAAAAGCAAAGAAAGCTGCTCAAGAACAAGTG
CTGAATGCAAGTAGAGCCAAGAAATGA

Translation (568 aa):
MLLLPSAADGRGTAITHALTSASTLCQVEPVGRWFEAFVKRRNRNASASFQELEDKKELSEESEDEELQL
EEFPMLKTLDPKDWKNQDHYAVLGLGHVRYKATQRQIKAAHKAMVLKHHPDKRKAAGEPIKEGDNDYFTC
ITKAYEMLSDPVKRRAFNSVDPTFDNSVPSKSEAKDNFFEVFTPVFERNSRWSNKKNVPKLGDMNSSFED
VDIFYSFWYNFDSWREFSYLDEEEKEKAECRDERRWIEKQNRATRAQRKKEEMNRIRTLVDNAYSCDPRI
KKFKEEEKAKKEAEKKAKAEAKRKEQEAKEKQRQAELEAARLAKEKEEEEVRQQALLAKKEKDIQKKAIK
KERQKLRNSCKIEEINEQIRKEKEEAEARMRQASKNTEKSTGGGGNGSKNWSEDDLQLLIKAVNLFPAGT
NSRWEVIANYMNIHSSSGVKRTAKDVIGKAKSLQKLDPHQKDDINKKAFDKFKKEHGVVPQADNATPSER
FEGPYTDFTPWTTEEQKLLEQALKTYPVNTPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQEQV
LNASRAKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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