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Report for CCDS47567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47567.1 Public Homo sapiens 7 SCRN1 24 110 108 CCDS HistoryNCBI Gene:9805Re-query CCDS DB by CCDS ID:47567.1Re-query CCDS DB by GeneID:9805See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434476.6 ENSP00000388942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434476.6Link to Ensembl Protein Viewer:ENSP00000388942.1Re-query CCDS DB by Nucleotide ID:ENST00000434476Re-query CCDS DB by Protein ID:ENSP00000388942
Original member Current member NCBI NM_001145514.1 NP_001138986.1 Accepted alive Link to Nucleotide Sequence:NM_001145514.1Link to Protein Sequence:NP_001138986.1Re-query CCDS DB by Nucleotide ID:NM_001145514Re-query CCDS DB by Protein ID:NP_001138986Link to BLAST:NP_001138986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138986.1 434 Q12765-2 434 100% 0 0

Chromosomal Locations for CCDS 47567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29923957 29924115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29926452 29926632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29936556 29936721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29940682 29940876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29943977 29944179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29955179 29955360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29968909 29969068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29990182 29990240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGTACAGGACGGCACTTTTAAAACCAGGGACTCGACTTGGACGTGCGAGTCAACAAGGATGGCTGCAG
CTCCTCCAAGTTACTGTTTTGTTGCCTTCCCTCCACGTGCTAAGGATGGTCTGGTGGTATTTGGGAAAAA
TTCAGCCCGGCCCAGAGATGAAGTGCAAGAGGTTGTGTATTTCTCGGCTGCTGATCACGAACCGGAGAGC
AAGGTTGAGTGCACTTACATTTCAATCGACCAAGTTCCAAGGACCTATGCCATAATGATAAGCAGACCCG
CCTGGCTCTGGGGAGCAGAAATGGGAGCCAATGAACATGGAGTGTGCATAGCCAATGAAGCCATCAACAC
CAGAGAGCCAGCTGCCGAGATAGAAGCCTTGCTGGGGATGGATCTGGTCAGGCTTGGTTTAGAAAGAGGG
GAAACAGCTAAAGAAGCCTTAGATGTCATTGTCTCCTTGTTGGAAGAACATGGACAAGGTGGGAATTACT
TTGAAGATGCAAACTCCTGCCACAGCTTCCAAAGTGCATATCTGATTGTGGATCGTGATGAAGCCTGGGT
GCTCGAGACCATAGGGAAGTACTGGGCTGCCGAGAAAGTCACAGAGGGAGTGAGGTGCATTTGCAGTCAG
CTTTCGCTCACCACTAAGATGGATGCAGAGCATCCGGAACTCAGGAGTTACGCTCAGAGCCAAGGTTGGT
GGACGGGAGAGGGCGAGTTCAATTTTTCCGAAGTCTTTTCTCCAGTTGAGGATCATCTAGACTGCGGTGC
TGGCAAAGACAGCTTAGAAAAACAAGAAGAAAGCATCACAGTGCAGACTATGATGAACACCTTACGGGAC
AAAGCCAGCGGAGTGTGCATAGACTCTGAGTTTTTCCTCACCACAGCCAGTGGAGTGTCTGTCCTGCCGC
AGAATAGAAGCTCTCCGTGCATTCACTACTTCACTGGAACCCCTGATCCTTCCAGGTCCATATTCAAGCC
TTTCATCTTTGTTGATGACGTAAAACTTGTCCCCAAAACACAGTCTCCCTGTTTTGGGGATGACGACCCT
GCCAAAAAGGAGCCTCGGTTCCAGGAGAAACCAGACCGCCGGCATGAGCTGTACAAAGCCCACGAGTGGG
CACGTGCCATCATCGAAAGTGACCAGGAGCAAGGTCGCAAGCTGAGGAGCACCATGCTGGAGCTGGAGAA
GCAAGGCCTGGAAGCCATGGAAGAAATCCTGACCAGCTCCGAGCCACTGGACCCTGCGGAAGTGGGGGAC
CTTTTCTATGACTGTGTTGACACGGAGATTAAGTTCTTTAAGTGA

Translation (434 aa):
MVQDGTFKTRDSTWTCESTRMAAAPPSYCFVAFPPRAKDGLVVFGKNSARPRDEVQEVVYFSAADHEPES
KVECTYISIDQVPRTYAIMISRPAWLWGAEMGANEHGVCIANEAINTREPAAEIEALLGMDLVRLGLERG
ETAKEALDVIVSLLEEHGQGGNYFEDANSCHSFQSAYLIVDRDEAWVLETIGKYWAAEKVTEGVRCICSQ
LSLTTKMDAEHPELRSYAQSQGWWTGEGEFNFSEVFSPVEDHLDCGAGKDSLEKQEESITVQTMMNTLRD
KASGVCIDSEFFLTTASGVSVLPQNRSSPCIHYFTGTPDPSRSIFKPFIFVDDVKLVPKTQSPCFGDDDP
AKKEPRFQEKPDRRHELYKAHEWARAIIESDQEQGRKLRSTMLELEKQGLEAMEEILTSSEPLDPAEVGD
LFYDCVDTEIKFFK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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