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Report for CCDS47447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47447.1 Public Homo sapiens 6 COL9A1 24 110 108 CCDS HistoryNCBI Gene:1297Re-query CCDS DB by CCDS ID:47447.1Re-query CCDS DB by GeneID:1297See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320755.12 ENSP00000315252.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320755.12Link to Ensembl Protein Viewer:ENSP00000315252.7Re-query CCDS DB by Nucleotide ID:ENST00000320755Re-query CCDS DB by Protein ID:ENSP00000315252
Original member Current member NCBI NM_078485.4 NP_511040.2 Accepted alive Link to Nucleotide Sequence:NM_078485.4Link to Protein Sequence:NP_511040.2Re-query CCDS DB by Nucleotide ID:NM_078485Re-query CCDS DB by Protein ID:NP_511040Link to BLAST:NP_511040.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_511040.2 678 P20849-2 678 100% 0 0

Chromosomal Locations for CCDS 47447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 70216897 70217081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70225932 70226009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70232583 70232771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70234539 70234593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70234794 70234940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70239254 70239286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70240689 70240733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70241419 70241454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70241964 70242035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70242662 70242715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70252120 70252173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70252262 70252315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70253385 70253429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70254476 70254529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70254963 70255016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70255150 70255203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70255337 70255390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70256768 70256821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70260657 70260710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70263244 70263297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70266717 70266770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70268804 70268860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70269633 70269665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70270314 70270367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70271655 70271708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70272065 70272088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70274047 70274082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70274719 70274772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70280812 70280874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70281004 70281039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70281390 70281464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70282981 70283052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGCCTGGACTGCGCGGGACCGCGGGGCCCTGGGGCTGCTGCTGTTGGGGCTCTGCTTGTGCGCGGCTC
AAAGAGGTCCCCCGGGTGAGCAGGGTCCTCCCGGGCCTCCGGGCCCCCCTGGAGTTCCAGGCATCGATGG
CATCGACGGTGACCGAGGTCCTAAGGGCCCCCCGGGCCCCCCGGGTCCTGCAGGTGAACCGGGAAAGCCA
GGAGCTCCAGGCAAGCCTGGCACACCTGGCGCTGATGGATTAACAGGACCTGATGGATCCCCTGGCTCCA
TTGGGTCAAAGGGACAAAAAGGAGAACCTGGTGTGCCTGGATCGCGTGGATTTCCAGGCCGTGGTATTCC
TGGACCCCCTGGTCCTCCTGGGACAGCAGGACTCCCTGGAGAGCTTGGCCGTGTAGGACCTGTTGGTGAC
CCTGGGAGAAGAGGACCACCTGGCCCCCCTGGCCCCCCAGGACCCAGAGGAACAATTGGCTTTCATGATG
GAGATCCATTGTGTCCCAATGCCTGTCCACCAGGTCGCTCAGGATATCCAGGCCTACCAGGCATGAGGGG
TCATAAAGGGGCTAAAGGAGAAATTGGTGAACCAGGAAGACAAGGACACAAGGGTGAAGAAGGTGACCAG
GGAGAACTCGGAGAAGTTGGAGCTCAAGGACCTCCAGGAGCCCAGGGTTTGCGAGGCATCACCGGCATAG
TTGGGGACAAAGGGGAAAAAGGTGCTCGGGGCTTAGATGGTGAACCTGGGCCTCAGGGTCTTCCTGGTGC
ACCTGGTGATCAAGGACAGCGAGGACCTCCAGGAGAAGCAGGTCCCAAAGGAGATAGAGGGGCTGAAGGT
GCTAGAGGAATTCCTGGTCTCCCTGGGCCCAAAGGAGACACGGGTTTGCCAGGTGTGGATGGCCGTGATG
GGATCCCTGGAATGCCTGGAACAAAGGGTGAACCAGGAAAACCTGGGCCTCCTGGTGATGCAGGATTGCA
GGGGTTACCAGGTGTACCTGGAATTCCTGGTGCAAAGGGTGTTGCTGGTGAAAAGGGTAGCACAGGTGCT
CCAGGGAAGCCTGGTCAGATGGGAAATTCAGGCAAACCGGGCCAACAGGGGCCTCCAGGAGAGGTGGGAC
CCCGAGGACCCCAGGGGCTTCCTGGCAGTAGAGGAGAATTAGGACCAGTGGGATCCCCAGGCCTACCAGG
TAAACTGGGTTCTCTGGGTAGCCCTGGCCTCCCTGGCTTGCCTGGGCCCCCTGGACTTCCTGGAATGAAA
GGTGACAGGGGTGTAGTCGGTGAACCGGGTCCAAAGGGTGAACAGGGTGCCTCTGGTGAAGAAGGTGAAG
CAGGAGAAAGGGGGGAACTTGGAGATATAGGATTACCTGGCCCAAAGGGATCTGCAGGTAATCCTGGGGA
ACCTGGCTTGAGAGGGCCTGAGGGAAGTCGGGGGCTTCCTGGAGTGGAAGGACCAAGAGGACCACCTGGA
CCCCGGGGTGTGCAGGGAGAACAGGGTGCCACCGGCCTGCCTGGTGTCCAGGGCCCTCCGGGTAGAGCAC
CGACAGATCAGCACATTAAGCAGGTTTGCATGAGAGTCATACAAGAACATTTTGCTGAGATGGCTGCCAG
TCTTAAGCGTCCAGACTCAGGTGCCACTGGGCTTCCTGGAAGGCCTGGCCCTCCTGGTCCCCCCGGCCCT
CCTGGAGAGAATGGTTTCCCAGGCCAGATGGGAATTCGTGGCCTTCCGGGCATTAAGGGGCCCCCTGGTG
CTCTTGGTTTGAGGGGACCTAAAGGTGACTTGGGAGAAAAGGGGGAGCGTGGCCCTCCAGGAAGAGGTCC
CAACGGTTTGCCTGGAGCTATAGGTCTCCCAGGTGACCCAGGCCCTGCCAGCTATGGCAGAAATGGCCGA
GACGGTGAGCGAGGCCCCCCAGGGGTGGCAGGAATTCCTGGAGTGCCTGGACCCCCGGGACCTCCTGGGC
TTCCCGGTTTCTGTGAGCCAGCCTCCTGCACCATGCAGGCTGGTCAGCGAGCATTTAACAAAGGGCCTGA
CCCTTGA

Translation (678 aa):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Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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