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Report for CCDS47284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47284.1 Public Homo sapiens 5 PCDHA11 24 110 108 CCDS HistoryNCBI Gene:56138Re-query CCDS DB by CCDS ID:47284.1Re-query CCDS DB by GeneID:56138See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47284.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398640.7 ENSP00000381636.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398640.7Link to Ensembl Protein Viewer:ENSP00000381636.3Re-query CCDS DB by Nucleotide ID:ENST00000398640Re-query CCDS DB by Protein ID:ENSP00000381636
Original member Current member NCBI NM_018902.5 NP_061725.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018902.5Link to Protein Sequence:NP_061725.1Re-query CCDS DB by Nucleotide ID:NM_018902Re-query CCDS DB by Protein ID:NP_061725Link to BLAST:NP_061725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061725.1 949 Q9Y5I1-1 949 100% 0 0

Chromosomal Locations for CCDS 47284.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140869104 140871494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGTTTGGTTTTCAGAGAAGGGGATTGGGCACCCCACGACTACAGCTCTGGCTTCTCCTCCTCGAATTCT
GGGAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTCGGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAACA
CATGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGG
AGCTGTGCGGGCAGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCATGTGAACGTGGAGGTGAAGGACATTAACGACAACCCGCCGGTGTTCTCGCTCAGAGAACAAAAGCTG
CTGATTGCGGAATCTAAGCAATCGGACTCGCGTTTTCCACTAGAGGGAGCTTCTGATGCTGACATTGAAG
AGAATGCTCTATTGACCTACAGGCTAAGTAAAAATGAGTATTTTTCTTTAGATTCACCAACAAATGGTAA
GCAGATTAAAAGACTGTCACTTATTTTAAAGAAGTCTCTGGATAGAGAGAAAACTCCGGAACTTAATTTG
CTGCTAACAGCTACAGACGGGGGAAAACCAGAGCTTACTGGCACCGTTCGGCTGTTAGTCCAAGTCTTGG
ATGTCAACGACAATGATCCAGAGTTTGATAAATCAGAATATAAGGTGAGCCTTATGGAAAATGCTGCTAA
AGAAACTCTTGTGCTCAAACTAAACGCCACAGACCGAGACGAAGGAGTCAATGGAGAGGTAACATACTCC
TTAATGTCAATTAAGCCCAATGGAAGACACTTATTTACACTAGATCAAAATAATGGAGAAGTGAGGGTCA
ATGGAACTTTAGATTATGAAGAAAACAAGTTTTATAAAATTGAAGTACAGGCTACAGATAAGGGGACTCC
CCCAATGGCAGGTCACTGTACAGTCTGGGTGGAAATCTTGGACACCAACGATAACTCTCCTGAAGTCGCC
GTGACTTCCTTGTCCCTCCCAGTACGAGAGGACGCTCAGCCCAGCACGGTCATTGCCCTGATCAGCGTGT
CTGACCGTGACTCAGGTGTCAACGGACAGGTGACCTGCTCGCTGACGCCCCACGTTCCCTTCAAGCTGGT
GTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAACGTGTGGGCCTAT
GAACTGGTGGTGACTGCGCGGGATGGGGGTTCGCCTTCTCTGTGGGCCACGGCCAGGGTATCCGTGGAGG
TGGCCGACGTGAACGACAATGCGCCTGCGTTCGCACAGCCCGAGTACACCGTGTTCGTGAAGGAGAACAA
CCCACCAGGCTGCCACATCTTCACAGTGTCGGCGCGGGACGCGGACGCGCAGGAGAACGCGCTGGTGTCC
TACTCGCTGGTGGAGCGGCGGTTGGGCGACCGCGCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCG
GCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCG
CGATGCGGGCGTGCCGCCTCTGAGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAAC
GCGCCGGCACTGCTGGCGACTCAGGCTGGCAGCGCGGGAGGCGCAGTTAACAAGCTAGTACCGCGGTCGG
TGGGTGCGGGCCACGTGGTGGCGAAGGTGCGCGCAGTGGATGCGGACTCAGGCTACAACGCGTGGCTTTC
ATATGAATTGCAGCCGGCGGCGGGCGGCTCGCGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATA
AGCACAACGCGTGCCCTGGACGAGGCAGACTCGCCGCGCCACCGACTTCTAGTACTGGTGAAGGATCACG
GTGAGCCGGCGCTGACGGCCACGGCCACCGTGCTGGTGTCGTTGGTGGAGAGCGGACAGGCGCCAAAGGC
CTCTTCCCGGACTTTGGCGGGCGCCGCGAGCCCAGAGGCTGCGCTGGTGGATGTCAACGTGTACCTGATC
ATCGCCATCTGCGTGGTGTCCAGCCTCCTGGTACTCACGCTGCTGCTGTATACGGCGCTGTGGTGGTCGG
CAACGCCCACTGAGGGCGCGTGCGCGCCGGGGAAGCCCACGCTGGTGTGCTCCCGCGCGGTGGGGAGCTG
GTCATACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGAGGAGGGCCCACCTAAGACGGACCTCATGGCC
TTCAGCCCCAGTCTTCCTCTAGGTCTGAATAAAGAGGAGGAAGGGGAAAGACAGGAGCCAGGGTCAAATC
ACCCCGGACAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAG
CTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACA
GTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCA
ACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATT
CATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGT
GACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCC
AGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAGTGA

Translation (949 aa):
MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVQRLFRVASKT
HGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVNVEVKDINDNPPVFSLREQKL
LIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSLDSPTNGKQIKRLSLILKKSLDREKTPELNL
LLTATDGGKPELTGTVRLLVQVLDVNDNDPEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYS
LMSIKPNGRHLFTLDQNNGEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVA
VTSLSLPVREDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVS
YSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLSSNVTLQVFVLDENDN
APALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPAAGGSRIPFRVGLYTGEI
STTRALDEADSPRHRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLI
IAICVVSSLLVLTLLLYTALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMA
FSPSLPLGLNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKS
DFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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