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Report for CCDS47280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47280.1 Public Homo sapiens 5 IK 24 110 108 CCDS HistoryNCBI Gene:3550Re-query CCDS DB by CCDS ID:47280.1Re-query CCDS DB by GeneID:3550See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417647.7 ENSP00000396301.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417647.7Link to Ensembl Protein Viewer:ENSP00000396301.2Re-query CCDS DB by Nucleotide ID:ENST00000417647Re-query CCDS DB by Protein ID:ENSP00000396301
Original member Current member NCBI NM_006083.4 NP_006074.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006083.4Link to Protein Sequence:NP_006074.2Re-query CCDS DB by Nucleotide ID:NM_006083Re-query CCDS DB by Protein ID:NP_006074Link to BLAST:NP_006074.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006074.2 557 Q13123 557 100% 0 0

Chromosomal Locations for CCDS 47280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140647909 140647924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140648471 140648537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140651714 140651806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140652088 140652147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140652977 140653144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140653938 140654052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140654516 140654586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140654681 140654727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140655829 140655992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140657554 140657662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140658737 140658776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140658939 140659164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140659315 140659333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140659756 140659834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140660115 140660195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140660758 140660815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140661620 140661708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140661899 140662007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140662179 140662213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140662302 140662329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGCCGGAGCGAGATAGTGAGCCGTTCTCCAACCCTTTGGCCCCCGATGGCCACGATGTGGATGATCCTC
ACTCCTTCCACCAATCAAAACTCACCAATGAAGACTTCAGGAAACTTCTCATGACCCCCAGGGCTGCACC
TACCTCTGCACCACCTTCTAAGTCACGTCACCATGAGATGCCAAGGGAGTACAATGAGGATGAAGACCCA
GCTGCACGAAGGAGGAAAAAGAAAAGTTATTATGCCAAGCTACGCCAACAAGAAATTGAGAGAGAGAGAG
AGCTAGCAGAGAAGTACCGGGATCGTGCCAAGGAACGGAGAGATGGAGTGAACAAAGATTATGAAGAAAC
CGAGCTTATCAGCACCACAGCTAACTATAGGGCTGTTGGCCCCACTGCTGAGGCGGACAAATCAGCTGCA
GAGAAGAGAAGACAGTTGATCCAGGAGTCCAAATTCTTGGGTGGTGACATGGAACACACCCATTTGGTGA
AAGGCTTGGATTTTGCTCTGCTTCAAAAGGTACGAGCTGAGATTGCCAGCAAAGAGAAAGAGGAAGAGGA
ACTGATGGAAAAGCCCCAGAAAGAAACCAAGAAAGATGAGGATCCTGAAAATAAAATTGAATTTAAAACA
CGTCTGGGCCGCAATGTTTACCGAATGCTTTTTAAGAGCAAAGCATATGAGCGGAATGAGTTGTTCCTGC
CGGGCCGCATGGCCTATGTGGTAGACCTGGATGATGAGTATGCTGACACAGATATCCCCACCACTCTTAT
CCGCAGCAAGGCTGATTGCCCCACCATGGAGGCCCAGACCACACTGACCACAAATGACATTGTCATTAGC
AAGCTGACCCAGATCCTTTCATACCTGAGGCAGGGAACCCGTAACAAGAAGCTTAAGAAGAAGGATAAAG
GGAAGCTGGAAGAGAAGAAACCTCCTGAGGCTGACATGAATATTTTTGAAGACATTGGGGATTACGTACC
CTCCACAACCAAGACACCTCGGGACAAGGAGCGGGAGAGATATCGGGAACGGGAGCGTGATCGGGAAAGA
GACAGAGACCGTGACCGAGAGCGAGAGCGAGAACGAGATCGGGAACGAGAGCGAGAGCGGGACCGAGAGA
GAGAAGAGGAAAAGAAGAGACACAGCTACTTTGAGAAGCCAAAAGTAGATGATGAGCCCATGGACGTTGA
CAAAGGACCTGGGTCTACCAAGGAGTTGATCAAGTCCATCAATGAAAAGTTTGCTGGGTCTGCTGGCTGG
GAAGGCACAGAATCGCTGAAGAAGCCAGAAGACAAAAAGCAGCTGGGAGATTTCTTTGGCATGTCCAACA
GTTATGCAGAGTGCTACCCAGCCACGATGGATGACATGGCTGTGGATAGTGATGAGGAGGTGGATTATAG
CAAAATGGACCAGGGTAACAAGAAGGGGCCCTTAGGCCGTTGGGACTTTGATACCCAGGAAGAATACAGC
GAGTATATGAACAACAAAGAAGCTTTGCCCAAGGCTGCATTCCAGTATGGTATCAAAATGTCTGAAGGGC
GGAAAACCAGGCGCTTCAAGGAAACCAATGACAAAGCAGAGCTTGATCGCCAGTGGAAGAAGATTAGTGC
AATCATTGAGAAGAGGAAGAAGATGGAAGCTGATGGGGTTGAAGTCAAAAGACCAAAATACTAA

Translation (557 aa):
MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEMPREYNEDEDP
AARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAA
EKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKT
RLGRNVYRMLFKSKAYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVIS
KLTQILSYLRQGTRNKKLKKKDKGKLEEKKPPEADMNIFEDIGDYVPSTTKTPRDKERERYRERERDRER
DRDRDRERERERDRERERERDREREEEKKRHSYFEKPKVDDEPMDVDKGPGSTKELIKSINEKFAGSAGW
EGTESLKKPEDKKQLGDFFGMSNSYAECYPATMDDMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYS
EYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEADGVEVKRPKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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