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Report for CCDS45785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45785.1 Public Homo sapiens 17 SPHK1 24 110 108 CCDS HistoryNCBI Gene:8877Re-query CCDS DB by CCDS ID:45785.1Re-query CCDS DB by GeneID:8877See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45785.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392496.3 ENSP00000376285.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392496.3Link to Ensembl Protein Viewer:ENSP00000376285.2Re-query CCDS DB by Nucleotide ID:ENST00000392496Re-query CCDS DB by Protein ID:ENSP00000376285
Original member Current member EBI ENST00000545180.5 ENSP00000440970.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545180.5Link to Ensembl Protein Viewer:ENSP00000440970.1Re-query CCDS DB by Nucleotide ID:ENST00000545180Re-query CCDS DB by Protein ID:ENSP00000440970
Original member Current member EBI ENST00000592299.6 ENSP00000465726.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000592299.6Link to Ensembl Protein Viewer:ENSP00000465726.2Re-query CCDS DB by Nucleotide ID:ENST00000592299Re-query CCDS DB by Protein ID:ENSP00000465726
Original member Current member NCBI NM_001142601.2 NP_001136073.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142601.2Link to Protein Sequence:NP_001136073.1Re-query CCDS DB by Nucleotide ID:NM_001142601Re-query CCDS DB by Protein ID:NP_001136073Link to BLAST:NP_001136073.1
Original member Current member NCBI NM_001142602.2 NP_001136074.1 Accepted alive Link to Nucleotide Sequence:NM_001142602.2Link to Protein Sequence:NP_001136074.1Re-query CCDS DB by Nucleotide ID:NM_001142602Re-query CCDS DB by Protein ID:NP_001136074Link to BLAST:NP_001136074.1
Original member Current member NCBI NM_001355139.2 NP_001342068.1 Accepted alive Link to Nucleotide Sequence:NM_001355139.2Link to Protein Sequence:NP_001342068.1Re-query CCDS DB by Nucleotide ID:NM_001355139Re-query CCDS DB by Protein ID:NP_001342068Link to BLAST:NP_001342068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136073.1 384 Q9NYA1-1 384 100% 0 0
NP_001136074.1 384 Q9NYA1-1 384 100% 0 0
NP_001342068.1 384 Q9NYA1-1 384 100% 0 0

Chromosomal Locations for CCDS 45785.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76385645 76385654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76385985 76386137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76386221 76386315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76386393 76386508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76386806 76387586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGATCCAGCGGGCGGCCCCCGGGGCGTGCTCCCGCGGCCCTGCCGCGTGCTGGTGCTGCTGAACCCGC
GCGGCGGCAAGGGCAAGGCCTTGCAGCTCTTCCGGAGTCACGTGCAGCCCCTTTTGGCTGAGGCTGAAAT
CTCCTTCACGCTGATGCTCACTGAGCGGCGGAACCACGCGCGGGAGCTGGTGCGGTCGGAGGAGCTGGGC
CGCTGGGACGCTCTGGTGGTCATGTCTGGAGACGGGCTGATGCACGAGGTGGTGAACGGGCTCATGGAGC
GGCCTGACTGGGAGACCGCCATCCAGAAGCCCCTGTGTAGCCTCCCAGCAGGCTCTGGCAACGCGCTGGC
AGCTTCCTTGAACCATTATGCTGGCTATGAGCAGGTCACCAATGAAGACCTCCTGACCAACTGCACGCTA
TTGCTGTGCCGCCGGCTGCTGTCACCCATGAACCTGCTGTCTCTGCACACGGCTTCGGGGCTGCGCCTCT
TCTCTGTGCTCAGCCTGGCCTGGGGCTTCATTGCTGATGTGGACCTAGAGAGTGAGAAGTATCGGCGTCT
GGGGGAGATGCGCTTCACTCTGGGCACCTTCCTGCGTCTGGCAGCCCTGCGCACCTACCGCGGCCGACTG
GCCTACCTCCCTGTAGGAAGAGTGGGTTCCAAGACACCTGCCTCCCCCGTTGTGGTCCAGCAGGGCCCGG
TAGATGCACACCTTGTGCCACTGGAGGAGCCAGTGCCCTCTCACTGGACAGTGGTGCCCGACGAGGACTT
TGTGCTAGTCCTGGCACTGCTGCACTCGCACCTGGGCAGTGAGATGTTTGCTGCACCCATGGGCCGCTGT
GCAGCTGGCGTCATGCATCTGTTCTACGTGCGGGCGGGAGTGTCTCGTGCCATGCTGCTGCGCCTCTTCC
TGGCCATGGAGAAGGGCAGGCATATGGAGTATGAATGCCCCTACTTGGTATATGTGCCCGTGGTCGCCTT
CCGCTTGGAGCCCAAGGATGGGAAAGGTGTGTTTGCAGTGGATGGGGAATTGATGGTTAGCGAGGCCGTG
CAGGGCCAGGTGCACCCAAACTACTTCTGGATGGTCAGCGGTTGCGTGGAGCCCCCGCCCAGCTGGAAGC
CCCAGCAGATGCCACCGCCAGAAGAGCCCTTATGA

Translation (384 aa):
MDPAGGPRGVLPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELG
RWDALVVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTL
LLCRRLLSPMNLLSLHTASGLRLFSVLSLAWGFIADVDLESEKYRRLGEMRFTLGTFLRLAALRTYRGRL
AYLPVGRVGSKTPASPVVVQQGPVDAHLVPLEEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRC
AAGVMHLFYVRAGVSRAMLLRLFLAMEKGRHMEYECPYLVYVPVVAFRLEPKDGKGVFAVDGELMVSEAV
QGQVHPNYFWMVSGCVEPPPSWKPQQMPPPEEPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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