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Report for CCDS45357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45357.1 Public Homo sapiens 15 RGMA 24 110 108 CCDS HistoryNCBI Gene:56963Re-query CCDS DB by CCDS ID:45357.1Re-query CCDS DB by GeneID:56963See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45357.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329082.12 ENSP00000330005.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329082.12Link to Ensembl Protein Viewer:ENSP00000330005.7Re-query CCDS DB by Nucleotide ID:ENST00000329082Re-query CCDS DB by Protein ID:ENSP00000330005
Original member Current member NCBI NM_020211.3 NP_064596.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020211.3Link to Protein Sequence:NP_064596.2Re-query CCDS DB by Nucleotide ID:NM_020211Re-query CCDS DB by Protein ID:NP_064596Link to BLAST:NP_064596.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064596.2 450 Q96B86-1 450 100% 0 0

Chromosomal Locations for CCDS 45357.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 93044998 93045705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93051993 93052507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93072916 93073031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93088919 93088932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGCAGCCGCCAAGGGAGAGGCTAGTGGTAACAGGCCGAGCTGGATGGATGGGTATGGGGAGAGGGGCAG
GACGTTCAGCCCTGGGATTCTGGCCGACCCTCGCCTTCCTTCTCTGCAGCTTCCCCGCAGCCACCTCCCC
GTGCAAGATCCTCAAGTGCAACTCTGAGTTCTGGAGCGCCACGTCGGGCAGCCACGCCCCAGCCTCAGAC
GACACCCCCGAGTTCTGTGCAGCCTTGCGCAGCTACGCCCTGTGCACGCGGCGGACGGCCCGCACCTGCC
GGGGTGACCTGGCCTACCACTCGGCCGTCCATGGCATAGAGGACCTCATGAGCCAGCACAACTGCTCCAA
GGATGGCCCCACCTCGCAGCCACGCCTGCGCACGCTCCCACCGGCCGGAGACAGCCAGGAGCGCTCGGAC
AGCCCCGAGATCTGCCATTACGAGAAGAGCTTTCACAAGCACTCGGCCACCCCCAACTACACGCACTGTG
GCCTCTTCGGGGACCCACACCTCAGGACTTTCACCGACCGCTTCCAGACCTGCAAGGTGCAGGGCGCCTG
GCCGCTCATCGACAATAATTACCTGAACGTGCAGGTCACCAACACGCCTGTGCTGCCCGGCTCAGCGGCC
ACTGCCACCAGCAAGCTCACCATCATCTTCAAGAACTTCCAGGAGTGTGTGGACCAGAAGGTGTACCAGG
CTGAGATGGACGAGCTCCCGGCCGCCTTCGTGGATGGCTCTAAGAACGGTGGGGACAAGCACGGGGCCAA
CAGCCTGAAGATCACTGAGAAGGTGTCAGGCCAGCACGTGGAGATCCAGGCCAAGTACATCGGCACCACC
ATCGTGGTGCGCCAGGTGGGCCGCTACCTGACCTTTGCCGTCCGCATGCCAGAGGAAGTGGTCAATGCTG
TGGAGGACTGGGACAGCCAGGGTCTCTACCTCTGCCTGCGGGGCTGCCCCCTCAACCAGCAGATCGACTT
CCAGGCCTTCCACACCAATGCTGAGGGCACCGGTGCCCGCAGGCTGGCAGCCGCCAGCCCTGCACCCACA
GCCCCCGAGACCTTCCCATACGAGACAGCCGTGGCCAAGTGCAAGGAGAAGCTGCCGGTGGAGGACCTGT
ACTACCAGGCCTGCGTCTTCGACCTCCTCACCACGGGCGACGTGAACTTCACACTGGCCGCCTACTACGC
GTTGGAGGATGTCAAGATGCTCCACTCCAACAAAGACAAACTGCACCTGTATGAGAGGACTCGGGACCTG
CCAGGCAGGGCGGCTGCGGGGCTGCCCCTGGCCCCCCGGCCCCTCCTGGGCGCCCTCGTCCCGCTCCTGG
CCCTGCTCCCTGTGTTCTGCTAG

Translation (450 aa):
MQPPRERLVVTGRAGWMGMGRGAGRSALGFWPTLAFLLCSFPAATSPCKILKCNSEFWSATSGSHAPASD
DTPEFCAALRSYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGPTSQPRLRTLPPAGDSQERSD
SPEICHYEKSFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSAA
TATSKLTIIFKNFQECVDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQHVEIQAKYIGTT
IVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQAFHTNAEGTGARRLAAASPAPT
APETFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDL
PGRAAAGLPLAPRPLLGALVPLLALLPVFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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