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Report for CCDS43513.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43513.2 Public Homo sapiens 6 SHPRH 24 110 108 CCDS HistoryNCBI Gene:257218Re-query CCDS DB by CCDS ID:43513.2Re-query CCDS DB by GeneID:257218See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 43513.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43513.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275233.12 ENSP00000275233.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275233.12Link to Ensembl Protein Viewer:ENSP00000275233.7Re-query CCDS DB by Nucleotide ID:ENST00000275233Re-query CCDS DB by Protein ID:ENSP00000275233
Original member Current member EBI ENST00000367505.6 ENSP00000356475.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367505.6Link to Ensembl Protein Viewer:ENSP00000356475.2Re-query CCDS DB by Nucleotide ID:ENST00000367505Re-query CCDS DB by Protein ID:ENSP00000356475
Original member Current member NCBI NM_001042683.3 NP_001036148.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042683.3Link to Protein Sequence:NP_001036148.2Re-query CCDS DB by Nucleotide ID:NM_001042683Re-query CCDS DB by Protein ID:NP_001036148Link to BLAST:NP_001036148.2
Original member Current member NCBI NM_001370327.1 NP_001357256.1 Accepted alive Link to Nucleotide Sequence:NM_001370327.1Link to Protein Sequence:NP_001357256.1Re-query CCDS DB by Nucleotide ID:NM_001370327Re-query CCDS DB by Protein ID:NP_001357256Link to BLAST:NP_001357256.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036148.2 1683 Q149N8-1 1683 100% 0 0
NP_001357256.1 1683 Q149N8-1 1683 100% 0 0

Chromosomal Locations for CCDS 43513.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145886691 145886787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145888020 145888100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145893215 145893393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145894150 145894236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145894885 145894977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145910448 145910636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145913478 145913549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145918131 145918232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145919348 145919491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145921167 145921392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145922286 145922348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145922663 145922836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145923643 145923785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145924739 145924846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145926204 145926296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145927189 145927277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145933057 145933178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145934907 145935163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145935278 145935441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145940723 145940801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145941623 145941874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145943143 145943802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145945381 145945637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145946233 145946341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145947493 145947643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145948272 145948350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145950264 145950482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145952349 145952478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145954690 145955322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5052 nt):
ATGAGCAGCCGACGGAAACGTGCTCCTCCAGTGAGGGTAGATGAGGAAAAGAGGCAGCAGCTTCATTGGA
ATATGCATGAGGACAGAAGGAATGAACCTATCATCATAAGTGATGATGACGAGCAGCCCTGCCCAGGTTC
AGATACCTCTTCTGCTCATTATATCATTCTAAGTGATAGTCTAAAGGAAGAAGTGGCTCACAGAGATAAG
AAGAGGTGTTCAAAAGTGGTGAGCTTCTCAAAACCAATTGAAAAAGAAGAGACTGTTGGTATTTTTTCCC
CTTTGTCTGTAAAGTTAAATATTGTGATTTCTCCCTATCATTTTGATAATTCCTGGAAAGCATTTCTAGG
AGAATTAACTCTTCAGCTTCTTCCTGCACAGAGTTTAATTGAAAATTTTTCCGAAAGGAGTATTACATTG
ATGAGTTCAGAGTCAAGCAATCAGTTCCTGATTTATGTTCATTCAAAAGGTGAAGATGTAGAGAAACAAA
AAAAAGAACCGATGAGTATTTGTGACAAGGGTATTCTGGTGGAGTCATCCTTCAGTGGTGAAATGTTAGA
AGATTTGGGGTGGCTACAAAAGAAGAGAAGAATAAAACTCTATCAGAAACCAGAAGGAAATCACATTATC
AAGGTTGGAATTTATCTTTTGGAAGCTGGCCTAGCAAAACTAGACTTCTTGAGTGATGCAAATTCAAGAA
TGAAAAAGTTCAATCAGCTCATGAAGAAAGTAATGGAAAAGTTACACAATTCTATTATTCCAGATGTGTT
GGAAGAGGATGAAGATGATCCGGAGAGTGAGCCAGAGGGACAAGACATTGACGAGCTGTATCACTTTGTG
AAACAAACACATCAGCAAGAAACGCAGTCCATCCAAGTGGATGTCCAGCATCCTGCATTGATCCCTGTGT
TGAGACCCTACCAAAGAGAGGCTGTCAATTGGATGCTACAACAAGAGTGTTTCAGAAGCAGTCCTGCTAC
TGAAAGTGCCCTGCACTTCTTATGGCGAGAGATTGTTACATCTGAGGGTCTGAAACTCTACTATAATCCA
TATACAGGCTGCATCATTCGTGAGTACCCAAATTCTGGGCCGCAGTTGCTTGGTGGAATTTTAGCAGATG
AGATGGGTCTTGGAAAGACAGTGGAGGTTTTGGCTCTGATTCTGACACATACTCGACAAGATGTCAAGCA
AGATGCTCTCACTCTTCCCGAGGGAAAAGTGGTGAATTATTTTATTCCGTCACATTATTTTGGAGGAAAA
CTGAAAAAGACAGAAATCCAGAATATCGAATTTGAACCAAAAGAAAAAGTTCAATGCCCTCCTACACGTG
TGATGATACTGACAGCTGTGAAAGAAATGAATGGAAAAAAAGGAGTGTCCATCCTTTCCATCTATAAGTA
TGTCAGTTCTATATATAGATACGATGTTCAACGGAACAGGAGTCTTTTGAAACGGATGCTGAAATGTTTA
ATTTTTGAAGGTCTCGTGAAACAGATCAAAGGCCATGGTTTTTCTGGGACTTTTACATTGGGAAAGAATT
ACAAGGAAGAGGATATATGTGATAAAACAAAAAAGCAGGCAGTAGGGAGTCCAAGGAAAATTCAGAAAGA
AACTAGAAAATCAGGGAACAAGGACACAGATTCTGAATACTTGCCATCAGACACCTCTGATGATGATGAT
GATCCTTACTATTATTATTATAAGTCCAGGAGAAATCGCAGTAAATTGAGGAAAAAGCTTGTTCCATCCA
CAAAAAAAGGAAAAAGTCAACCATTTATCAATCCCGATTCACAAGGTCACTGTCCAGCTACTAGCGACTC
TGGAATAACTGATGTTGCTATGTCTAAAAGTACATGTATCTCTGAATTCAACCAAGAACATGAAACAGAG
GACTGTGCTGAATCTCTAAATCATGCTGATAGTGATGTACCACCTTCTAATACCATGAGTCCCTTTAACA
CCTCTGATTACCGCTTTGAGTGTATATGTGGTGAACTTGATCAGATAGATCGTAAGCCTCGTGTTCAATG
CCTGAAGTGTCACCTGTGGCAACATGCAAAGTGTGTGAATTATGATGAGAAAAATCTGAAGATCAAGCCT
TTTTACTGCCCCCACTGCCTTGTTGCAATGGAACCAGTGTCAACAAGAGCAACTCTGATCATCTCTCCAA
GTTCCATCTGTCACCAGTGGGTGGATGAGATCAACAGGCATGTGAGGTCGTCATCTCTTCGAGTCTTGGT
ATATCAAGGAGTGAAGAAAGATGGCTTTTTACAACCTCATTTTTTGGCAGAACAGGATATAGTTATCATT
ACCTATGATGTACTGCGTTCAGAATTAAATTATGTCGATATCCCACATAGCAATAGTGAGGATGGGCGTC
GCCTACGGAACCAGAAGCGCTATATGGCTATCCCGAGCCCCCTGGTAGCTGTGGAGTGGTGGAGGATCTG
CCTTGATGAAGCTCAGATGGTTGAGTGTCCCACAGTAAAAGCTGCAGAAATGGCCCAGCGTTTGAGTGGG
ATTAATCGATGGTGTATCAGTGGCACTCCAGTACAGAGAGGATTAGAGGATCTTTTTGGGTTAGTGGTCT
TTCTTGGTATTGAACCTTACTGTGTCAAACACTGGTGGGTTCGACTTCTCTATCGGCCTTACTGCAAGAA
GAATCCTCAGCATCTCTACAGCTTTATTGCCAAGATACTGTGGAGGTCTGCAAAGAAAGATGTGATTGAC
CAAATCCAAATACCACCACAAACCGAAGAAATACACTGGCTCCACTTTTCTCCAGTGGAAAGGCATTTCT
ATCACCGTCAGCATGAGGTGTGCTGCCAGGATGTGGTGGTAAAACTCAGGAAGATTTCTGACTGGGCTCT
GAAGCTCAGCAGCCTAGACAGAAGGACTGTCACCTCTATCCTGTATCCATTGCTGAGGCTCAGACAGGCC
TGCTGTCACCCACAGGCTGTTCGTGGAGAGTTCTTGCCACTCCAAAAAAGCACCATGACAATGGAAGAGC
TGCTGACATCTTTGCAGAAGAAATGTGGAACTGAATGTGAAGAAGCACATCGACAGCTAGTTTGTGCTCT
CAATGGCTTAGCAGGCATTCATATTATTAAAGGTGAGTATGCCTTGGCAGCAGAATTGTACAGAGAAGTG
TTGCGCTCCTCGGAGGAACACAAAGGAAAACTCAAAACTGATTCACTTCAAAGACTTCATGCTACCCATA
ACTTGATGGAATTGTTGATAGCCAGGCACCCAGGGATACCACCTACCTTGCGTGATGGCCGACTTGAGGA
AGAGGCCAAACAGCTGCGAGAGCACTACATGAGCAAGTGTAATACAGAAGTTGCTGAAGCCCAGCAAGCT
TTATATCCTGTGCAGCAGACCATCCATGAGCTTCAAAGAAAGATTCATTCTAATTCTCCTTGGTGGCTAA
ATGTGATCCACAGAGCAATAGAATTTACTATTGATGAGGAGCTAGTTCAGCGAGTGCGAAATGAAATAAC
CAGCAACTACAAGCAACAAACTGGCAAGCTTTCTATGTCAGAGAAGTTCCGTGATTGCAGAGGTCTTCAG
TTCTTACTTACAACACAAATGGAAGAGCTAAATAAATGCCAGAAGCTAGTAAGAGAGGCTGTAAAAAACC
TGGAGGGACCTCCATCTCGTAATGTTATTGAGTCTGCAACAGTCTGTCACCTCCGACCAGCCAGACTTCC
TCTCAACTGCTGTGTCTTTTGTAAAGCTGATGAATTGTTCACAGAGTATGAATCAAAGCTATTTTCCAAC
ACAGTCAAAGGCCAGACTGCAATATTTGAGGAGATGATAGAAGATGAAGAAGGACTGGTGGATGATCGAG
CACCTACCACCACCCGGGGTCTCTGGGCAATAAGTGAGACAGAGCGATCTATGAAAGCAATACTATCATT
TGCAAAATCACATAGGTTTGATGTTGAATTTGTTGATGAAGGAAGCACTTCAATGGATCTCTTTGAAGCA
TGGAAGAAGGAATATAAGTTGCTTCATGAATATTGGATGGCTCTGAGGAATCGTGTGTCTGCTGTTGATG
AACTTGCAATGGCTACAGAACGACTAAGAGTGCGTGATCCTAGGGAGCCAAAGCCTAATCCGCCTGTTCT
TCATATCATTGAACCACATGAGGTAGAACAAAACCGAATAAAACTACTAAATGATAAAGCTGTTGCTACA
TCACAGCTTCAGAAAAAACTTGGGCAGCTTCTTTACCTAACTAATTTGGAGAAGTCTCAAGATAAAACAT
CGGGAGGTGTTAATCCAGAACCTTGCCCAATCTGTGCTCGACAGCTAGGAAAACAGTGGGCGGTACTGAC
CTGTGGTCACTGTTTCTGTAATGAATGCATTTCTATAATTATTGAACAATACAGCGTGGGATCTCACAGA
AGCTCCATTAAGTGTGCAATCTGCCGCCAGACCACATCTCACAAAGAAATCTCGTATGTCTTTACCTCAG
AGAAAGCAAACCAGGAGGAGGACATCCCTGTGAAGGGCAGCCATTCTACAAAAGTGGAAGCTGTGGTCAG
AACTCTGATGAAAATACAGCTTAGAGATCCAGGGGCCAAAGCACTCGTTTTCTCAACGTGGCAAGATGTA
TTAGATATTATTTCAAAAGCTCTTACTGACAACAACATGGAATTTGCACAAATCAGTCGTGTTAAGACAT
TTCAGGAGAACCTTTCAGCATTTAAACGTGATCCCCAAATCAATATTTTGCTGCTGCCCCTGCACACAGG
TTCTAATGGATTAACTATCATTGAAGCAACTCATGTTCTCTTGGTGGAGCCCATATTGAACCCTGCCCAT
GAGCTTCAGGCCATAGGGAGGGTGCACCGAATTGGACAGACAAAACCTACTATTGTACACAGATTCTTAA
TTAAAGCAACAATAGAAGAAAGAATGCAGGCAATGCTGAAAACTGCTGAGAGAAGTCACACGAACTCATC
AGCAAAGCATTCAGAGGCCTCTGTCTTGACTGTGGCTGACCTGGCAGACCTATTTACCAAAGAAACTGAA
GAGCTTGAATGA

Translation (1683 aa):
MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDSLKEEVAHRDK
KRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELTLQLLPAQSLIENFSERSITL
MSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESSFSGEMLEDLGWLQKKRRIKLYQKPEGNHII
KVGIYLLEAGLAKLDFLSDANSRMKKFNQLMKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFV
KQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNP
YTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK
LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCL
IFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRKSGNKDTDSEYLPSDTSDDDD
DPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGHCPATSDSGITDVAMSKSTCISEFNQEHETE
DCAESLNHADSDVPPSNTMSPFNTSDYRFECICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKP
FYCPHCLVAMEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVII
TYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG
INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVID
QIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQA
CCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREV
LRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQA
LYPVQQTIHELQRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKFRDCRGLQ
FLLTTQMEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFSN
TVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVEFVDEGSTSMDLFEA
WKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPVLHIIEPHEVEQNRIKLLNDKAVAT
SQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHR
SSIKCAICRQTTSHKEISYVFTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDV
LDIISKALTDNNMEFAQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAH
ELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTVADLADLFTKETE
ELE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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