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Report for CCDS42262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42262.1 Public Homo sapiens 17 CFAP52 24 110 108 CCDS HistoryNCBI Gene:146845Re-query CCDS DB by CCDS ID:42262.1Re-query CCDS DB by GeneID:146845See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42262.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396219.7 ENSP00000379521.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396219.7Link to Ensembl Protein Viewer:ENSP00000379521.3Re-query CCDS DB by Nucleotide ID:ENST00000396219Re-query CCDS DB by Protein ID:ENSP00000379521
Original member Current member NCBI NM_001080556.2 NP_001074025.1 Accepted alive Link to Nucleotide Sequence:NM_001080556.2Link to Protein Sequence:NP_001074025.1Re-query CCDS DB by Nucleotide ID:NM_001080556Re-query CCDS DB by Protein ID:NP_001074025Link to BLAST:NP_001074025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074025.1 552 Q8N1V2-3 552 100% 0 0

Chromosomal Locations for CCDS 42262.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 9576696 9576765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9586702 9586834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9594193 9594321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9598234 9598333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9600067 9600183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9608119 9608219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9612309 9612479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9628672 9628820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9632888 9633033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9635405 9635556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9638609 9638711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9641724 9641835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 9643023 9643198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGATAACAAAATTTCGCCGGAGGCCCAAGTGGCGGAGCTGGAACTTGACGCCGTGATCGGCTTCAATG
ACATCATTTTGTGGGATTATAAGAACAGAGAGCTGCTTGCTCGGCTGTCCCTTCACAAAGGCAAAATTGA
AGCTCTGGCCTTTTCTCCAAATGATTTGTACTTGGTATCACTAGGAGGCCCAGATGACGGAAGTGTGGTG
GTGTGGAGCATAGCCAAGAGAGATGCCATCTGTGGCAGCCCTGCAGCCGGCCTCAATGTTGGCAATGCCA
CCAATGTGATCTTCTCCAGGTGCCGGGATGAGATGTTTATGACTGCTGGAAATGGGACAATTCGAGTATG
GGAATTGGATCTTCCAAATAGAAAAATCTGGCCAACTGAGTGCCAAACAGGACAGTTGAAAAGAATAGTC
ATGAGTATTGGAGTGGATGATGATGATAGCTTTTTCTACCTTGGCACCACGACTGGAGATATTCTAAAAA
TGAACCCCAGGACTAAACTGCTGACAGATGTTGGGCCTGCGAAGGACAAATTCAGTTTGGGAGTGTCAGC
TATCAGGTGCCTGAAGATGGGGGGTTTGTTGGTGGGCTCTGGAGCCGGACTGCTGGTCTTCTGTAAAAGC
CCTGGCTACAAACCCATCAAGAAGATTCAGTTACAAGGCGGCATCACTTCTATCACACTTCGAGGAGAAG
GACACCAGTTTCTCGTAGGAACAGAAGAATCGCACATTTATCGTGTCAGCTTCACGGATTTCAAAGAGAC
GCTCATAGCGACTTGTCACTTTGATGCTGTCGAGGATATTGTCTTTCCATTTGGCACTGCTGAGCTATTT
GCAACCTGTGCCAAGAAGGATATCAGGGTGTGGCACACATCATCCAACAGGGAGCTGCTGCGGATCACCG
TGCCCAACATGACCTGCCACGGCATCGACTTCATGAGGGACGGCAAAAGCATCATTTCAGCATGGAACGA
CGGTAAAATCCGAGCCTTCGCCCCAGAGACAGGCCGACTGATGTATGTCATTAACAATGCTCACAGGATC
GGCGTCACCGCCATCGCCACCACCAGTGACTGTAAAAGGGTCATCAGTGGCGGTGGGGAAGGGGAGGTGA
GGGTATGGCAGATAGGCTGTCAGACCCAGAAGCTGGAGGAGGCCCTGAAGGAACACAAGTCATCAGTGTC
CTGCATTAGGGTGAAGAGGAACAACGAGGAGTGTGTCACCGCCAGCACCGATGGGACTTGTATCATTTGG
GACCTTGTGCGTCTCAGGAGGAATCAGATGATACTAGCCAACACCTTATTCCAGTGTGTGTGCTATCACC
CTGAGGAGTTCCAGATCATCACCAGCGGAACAGACAGAAAGATTGCTTACTGGGAAGTATTTGATGGGAC
AGTAATCAGAGAATTGGAAGGTTCCCTGTCTGGGTCGATAAATGGCATGGATATCACACAGGAAGGGGTG
CACTTTGTCACAGGTGGAAATGACCATCTGGTCAAAGTTTGGGATTATAATGAGGGTGAAGTGACTCACG
TTGGGGTGGGACACAGTGGCAACATCACACGCATCCGCATAAGTCCAGGAAATCAATATATTGTTAGTGT
AAGTGCCGATGGAGCCATTTTGCGATGGAAGTACCCATATACCTCCTGA

Translation (552 aa):
MDNKISPEAQVAELELDAVIGFNDIILWDYKNRELLARLSLHKGKIEALAFSPNDLYLVSLGGPDDGSVV
VWSIAKRDAICGSPAAGLNVGNATNVIFSRCRDEMFMTAGNGTIRVWELDLPNRKIWPTECQTGQLKRIV
MSIGVDDDDSFFYLGTTTGDILKMNPRTKLLTDVGPAKDKFSLGVSAIRCLKMGGLLVGSGAGLLVFCKS
PGYKPIKKIQLQGGITSITLRGEGHQFLVGTEESHIYRVSFTDFKETLIATCHFDAVEDIVFPFGTAELF
ATCAKKDIRVWHTSSNRELLRITVPNMTCHGIDFMRDGKSIISAWNDGKIRAFAPETGRLMYVINNAHRI
GVTAIATTSDCKRVISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKRNNEECVTASTDGTCIIW
DLVRLRRNQMILANTLFQCVCYHPEEFQIITSGTDRKIAYWEVFDGTVIRELEGSLSGSINGMDITQEGV
HFVTGGNDHLVKVWDYNEGEVTHVGVGHSGNITRIRISPGNQYIVSVSADGAILRWKYPYTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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