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Report for CCDS42201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42201.1 Public Homo sapiens 16 C16orf46 24 110 108 CCDS HistoryNCBI Gene:123775Re-query CCDS DB by CCDS ID:42201.1Re-query CCDS DB by GeneID:123775See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378611.8 ENSP00000367874.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378611.8Link to Ensembl Protein Viewer:ENSP00000367874.4Re-query CCDS DB by Nucleotide ID:ENST00000378611Re-query CCDS DB by Protein ID:ENSP00000367874
Original member Current member NCBI NM_001100873.2 NP_001094343.1 Accepted alive Link to Nucleotide Sequence:NM_001100873.2Link to Protein Sequence:NP_001094343.1Re-query CCDS DB by Nucleotide ID:NM_001100873Re-query CCDS DB by Protein ID:NP_001094343Link to BLAST:NP_001094343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094343.1 388 Q6P387-2 388 100% 0 0

Chromosomal Locations for CCDS 42201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 81054071 81054094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81061206 81062138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81063746 81063955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGATCTCTGTCAGAAAAATGAGACTGACTTAGAAAATGCTGAAAATAATGAAATTCAGTTCACAGAAG
AAACAGAACCAACCTATACTTGTCCAGATGGAAAAAGTGAAAAAAATCATGTTTATTGTCTTCTCGATGT
CAGTGACATTACGCTTGAACAAGATGAAAAAGCCAAAGAGTTTATTATTGGAACTGGATGGGAAGAGGCA
GTCCAAGGGTGGGGAAGGACTTCTCCAGCTGCCTGCATCTGGCCGAGGAAGATACCAAAAAAGGCGAGGG
TAGGGGAAGGTGCCTGCAGCGACTGCTTGGTGTGTGTTAACCTCTCCCACTGGAGCCTCCAGACCAAGCC
TCCTACTGAGGGGGGCCCAGAGAAGGATCAGAGCAGCCCCTCCCAGACTCAGGCAGCCCCCCAGGGCCCC
AGCACTGCTTCCAGGGCAATTAGCGACATCTGCTTTCCCACCTACTTTCGAGCAGAGAAAAAAAGTCTGC
AAATCAAGGAGTTTATTTGGTGCAACAAAGACTGGGCCATCCCCGGCACTAATAGGGGCAAGGCCTCTGG
GAATCCCAGTGGAGGGGCCCACAGAGGGCTGTCCATCCCAGGCCCCCTGACTTCCAGGGCCCTCCTAGTT
CTGCCTCCCCTGAAGGCTTCACTTTCAAATGCTTTGGATGTTCTGGGTAAGAAGAGTAAGAACTCTTTCT
TGCAGTCAGAAGAGAAGGTGCTGGATGTGGAAAAGGATGGGTGTGTGGCTTATGCATATGGCTTGAAAAC
AGCAGATGGGAAAGGTGAAAAAAGAGCCAGTGAGCTGGCCAAACACCCTATGGTCAACGACACGCCATCC
TCCCCTTCCCCAGCGGCCCAGATATCCCTGCTGACCGATCCGGAGCAGCGCTGCCTGCATTGGTCCCTCC
TGTCTGAGAAAAACCTGGCGTGCCCTCCAGACCCCAGCAACGTTCGCTACCTTGCTGCCTTGCAGCTTCT
GCAGAAACGGGGAGTGCAAAGCTACAAATCCAAATTCAAAGCCAAGGAGCCAAGATCTCCTGTGATCACC
CGAAAGCATGTTCTCCCAAAGGCCAAGCAGGAAAACAGGCCCCAAATGCTGGAGACCAAAGTTTTCCCAA
GACCTGTCTTGCCGTCTCTCACACACAGGAAAAAGAAGATAAAGTAG

Translation (388 aa):
MDLCQKNETDLENAENNEIQFTEETEPTYTCPDGKSEKNHVYCLLDVSDITLEQDEKAKEFIIGTGWEEA
VQGWGRTSPAACIWPRKIPKKARVGEGACSDCLVCVNLSHWSLQTKPPTEGGPEKDQSSPSQTQAAPQGP
STASRAISDICFPTYFRAEKKSLQIKEFIWCNKDWAIPGTNRGKASGNPSGGAHRGLSIPGPLTSRALLV
LPPLKASLSNALDVLGKKSKNSFLQSEEKVLDVEKDGCVAYAYGLKTADGKGEKRASELAKHPMVNDTPS
SPSPAAQISLLTDPEQRCLHWSLLSEKNLACPPDPSNVRYLAALQLLQKRGVQSYKSKFKAKEPRSPVIT
RKHVLPKAKQENRPQMLETKVFPRPVLPSLTHRKKKIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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