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Report for CCDS41948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41948.1 Public Homo sapiens 14 MDGA2 24 110 108 CCDS HistoryNCBI Gene:161357Re-query CCDS DB by CCDS ID:41948.1Re-query CCDS DB by GeneID:161357See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357362.7 ENSP00000349925.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357362.7Link to Ensembl Protein Viewer:ENSP00000349925.3Re-query CCDS DB by Nucleotide ID:ENST00000357362Re-query CCDS DB by Protein ID:ENSP00000349925
Original member Current member NCBI NM_182830.4 NP_878250.2 Accepted alive Link to Nucleotide Sequence:NM_182830.4Link to Protein Sequence:NP_878250.2Re-query CCDS DB by Nucleotide ID:NM_182830Re-query CCDS DB by Protein ID:NP_878250Link to BLAST:NP_878250.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878250.2 727 Q7Z553-2 727 100% 0 0

Chromosomal Locations for CCDS 41948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 46841931 46842019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46845766 46845871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46855024 46855154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46873433 46873591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46874045 46874200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46877489 46877509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46882044 46882221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46920012 46920160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 46957374 46957643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47035011 47035304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47061249 47061578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47096854 47097123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47131714 47131744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGGTGTCGTTTAGACTGTCCAATAAAACAGCATCACCGTCAATTAAACTCTTGGTGGATGATCCTATAG
TTGTAAATCCTGGAGAGGCCATAACATTAGTATGTGTTACAACAGGAGGAGAGCCTGCACCTTCTCTCAC
CTGGGTCAGGTCCTTTGGGACTCTGCCTGAAAAGACTGTTTTGAATGGAGGAACTTTGACCATACCTGCC
ATCACCTCAGATGATGCTGGTACTTACAGCTGCATTGCCAATAATAATGTGGGAAACCCTGCAAAAAAGT
CCACCAACATCATTGTGAGAGCATTAAAAAAAGGACGATTTTGGATCACACCAGATCCTTATCACAAAGA
TGACAACATCCAGATTGGCCGTGAGGTGAAAATATCTTGCCAAGTAGAAGCTGTTCCTTCTGAGGAGCTA
ACATTTAGTTGGTTTAAAAATGGTCGTCCATTAAGAAGTTCTGAGCGGATGGTCATTACACAGACTGATC
CTGATGTCTCTCCGGGAACAACAAACTTGGACATCATTGATTTAAAATTCACGGATTTTGGGACGTACAC
ATGTGTAGCATCTCTGAAGGGAGGAGGAATATCTGATATCAGTATCGATGTTAATATATCCAGCAGCACA
GTTCCACCCAATCTGACTGTTCCACAGGAAAAATCACCATTGGTCACCAGAGAAGGAGACACAATAGAAC
TGCAATGTCAAGTAACTGGCAAACCTAAACCAATCATCCTTTGGTCTAGAGCGGATAAAGAAGTTGCAAT
GCCTGATGGATCAATGCAAATGGAGAGTTATGATGGAACACTGAGGATTGTGAATGTATCTAGGGAAATG
TCAGGAATGTACAGATGTCAGACCAGCCAATACAATGGATTTAACGTGAAACCAAGGGAAGCCTTGGTGC
AGCTCATCGTTCAGTATCCCCCTGCAGTGGAACCAGCATTCTTGGAAATCCGGCAAGGACAGGATCGAAG
TGTCACTATGAGTTGCAGAGTACTGAGAGCCTATCCAATACGGGTGCTGACCTATGAGTGGCGCTTGGGC
AATAAATTATTACGGACGGGTCAATTTGACTCTCAGGAATACACAGAGTACGCTGTGAAGAGTCTTTCCA
ATGAAAACTATGGGGTTTATAACTGTAGCATCATAAATGAAGCTGGAGCTGGGAGATGCAGCTTTCTTGT
TACAGGAAAGGCCTATGCTCCAGAATTCTATTATGATACCTACAATCCAGTATGGCAGAACAGACACCGT
GTTTATTCTTACAGTCTACAGTGGACACAGATGAATCCTGATGCAGTGGATCGGATTGTTGCATACCGGT
TGGGCATCAGGCAGGCTGGACAGCAGCGCTGGTGGGAGCAGGAGATTAAAATAAATGGGAATATTCAAAA
GGGAGAATTAATTACATATAACTTGACAGAGCTAATTAAACCAGAAGCTTATGAAGTCCGACTGACTCCT
CTCACCAAATTTGGTGAAGGAGATTCAACAATTCGTGTGATCAAATATAGTGCTCCTGTAAATCCTCATT
TGAGAGAATTTCATTGTGGATTTGAAGATGGTAATATTTGTTTGTTCACTCAAGATGATACAGATAATTT
TGACTGGACAAAGCAAAGTACAGCAACAAGAAATACAAAATATACTCCTAATACAGGACCTAATGCTGAC
CGTAGTGGCTCCAAAGAAGGTTTTTATATGTACATTGAGACATCACGACCCAGATTGGAAGGCGAAAAGG
CTCGACTTCTCAGCCCTGTTTTCAGCATAGCTCCCAAAAACCCTTATGGACCCACAAACACTGCATATTG
TTTCAGCTTCTTTTATCACATGTATGGACAACATATAGGTGTCTTAAATGTTTATCTACGTTTGAAAGGG
CAAACAACAATAGAGAATCCACTGTGGTCTTCAAGTGGGAATAAAGGACAAAGATGGAATGAGGCTCATG
TTAATATATACCCAATTACTTCATTTCAGCTCATTTTTGAAGGTATCCGAGGTCCTGGAATAGAAGGTGA
CATTGCTATTGATGATGTATCAATTGCAGAAGGAGAATGTGCAAAACAAGACCTAGCAACTAAGAATTCC
GTTGATGGTGCTGTTGGGATTTTGGTTCATATATGGCTTTTTCCCATTATCGTCCTCATCTCTATCTTAA
GTCCTCGAAGGTGA

Translation (727 aa):
MVSFRLSNKTASPSIKLLVDDPIVVNPGEAITLVCVTTGGEPAPSLTWVRSFGTLPEKTVLNGGTLTIPA
ITSDDAGTYSCIANNNVGNPAKKSTNIIVRALKKGRFWITPDPYHKDDNIQIGREVKISCQVEAVPSEEL
TFSWFKNGRPLRSSERMVITQTDPDVSPGTTNLDIIDLKFTDFGTYTCVASLKGGGISDISIDVNISSST
VPPNLTVPQEKSPLVTREGDTIELQCQVTGKPKPIILWSRADKEVAMPDGSMQMESYDGTLRIVNVSREM
SGMYRCQTSQYNGFNVKPREALVQLIVQYPPAVEPAFLEIRQGQDRSVTMSCRVLRAYPIRVLTYEWRLG
NKLLRTGQFDSQEYTEYAVKSLSNENYGVYNCSIINEAGAGRCSFLVTGKAYAPEFYYDTYNPVWQNRHR
VYSYSLQWTQMNPDAVDRIVAYRLGIRQAGQQRWWEQEIKINGNIQKGELITYNLTELIKPEAYEVRLTP
LTKFGEGDSTIRVIKYSAPVNPHLREFHCGFEDGNICLFTQDDTDNFDWTKQSTATRNTKYTPNTGPNAD
RSGSKEGFYMYIETSRPRLEGEKARLLSPVFSIAPKNPYGPTNTAYCFSFFYHMYGQHIGVLNVYLRLKG
QTTIENPLWSSSGNKGQRWNEAHVNIYPITSFQLIFEGIRGPGIEGDIAIDDVSIAEGECAKQDLATKNS
VDGAVGILVHIWLFPIIVLISILSPRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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