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Report for CCDS41146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41146.1 Public Mus musculus X Tbc1d8b 23 108 98 CCDS HistoryNCBI Gene:245638Re-query CCDS DB by CCDS ID:41146.1Re-query CCDS DB by GeneID:245638See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096313.3 ENSMUSP00000094036.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096313.3Link to Ensembl Protein Viewer:ENSMUSP00000094036.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096313Re-query CCDS DB by Protein ID:ENSMUSP00000094036
Original member Current member NCBI NM_001081499.2 NP_001074968.1 Accepted alive Link to Nucleotide Sequence:NM_001081499.2Link to Protein Sequence:NP_001074968.1Re-query CCDS DB by Nucleotide ID:NM_001081499Re-query CCDS DB by Protein ID:NP_001074968Link to BLAST:NP_001074968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074968.1 1114 A3KGB4 1114 100% 0 0

Chromosomal Locations for CCDS 41146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 139685181 139685310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139700999 139701109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139704602 139704720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139705956 139706181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139707117 139707357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139712254 139712461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139713255 139713419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139723903 139724052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139725078 139725228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139725664 139725878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139732258 139732375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139733955 139734240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139736289 139736418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139736954 139737052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139741927 139741995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139742152 139742392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139743356 139743421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139745208 139745291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139746351 139746407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139749948 139750045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139751461 139751841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3345 nt):
ATGTGGCTGAAGCCCGAGGAAGTGCTGTTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGATCCAACG
AGTACTTTGTCCTGCAAAGGCGTCGAGGCTACGGGGAAGAAGGAGGAGGGGGACTTACAGGGCTCTTGGT
TGGGACTCTTGATTCTGTCTTAGACTCCACTGCTAAAGTAGCTCCATTTCGCATCCTACACCAGACACCA
GATTCTCAAGTGTACTTGTCAATTGCATGTGGAGCCAACAGAGAAGAAATAACAAAACATTGGGACTGGT
TGGAACAAAATATAATGAAGACTTTATCTGTGTTTGATTCAAATGAAGATATTACCAATTTTGTACAAGG
CAAAATAAGAGGACTAATCGCTGAAGAGGGGAAACAGTCTTTTGCTAAAGAAGATGATCCTGAGAAATTT
CGAGAAGCCCTTTTGAAATTTGAAAAATCTTTTGGTTTACCAGAGCAGGAAAAATTAGTAACTTATTATT
CCTGCAGTTACTGGAGAGGACGGGTCCCTTGTCAGGGCTGGCTCTATCTAAGTACCAACTTTCTGAGCTT
CTATTCCTTCTTGCTAGGATCAGAAATTAAACTCATTATCTCCTGGGATGCAATCTCAAAACTTGAAAAG
ACTTCAACTGTTATATTAACTGAGAGCATTCACGTATGTTCTCAAGGAGAGAATCACTATTTTTCAATGT
TTTTGCACATTAATGAGACATACCTTCTTATGGAACAACTGGCAAACTATGCCATAAAGAGACTTTTTGA
TAAAGAAACATTTGATAATGACCCAGTCCTTGATGATCCTCTACAGATTACCAAAAGAGGTTTGGAATAT
CGAGCCCACAGTGAGCAATTCAAAGCCTTTTTTAGGCTACCCAAAGAAGAGACATTGAAAGAAGTACATG
AGTGTTTCTTATGGGTACCATTCAGCCACTTCAGTAGTCACGGAAAAATGTGCATTTCAGAAAACTATAT
TTGCTTTGCTAGCCAGGATGGGAATCTATGCAGTGTAATCATTCCATTACGAGAGGTCTTAGCTATAGAT
AAAACTGATGACTCCAACAGATCGGTCATCATTAGCATCAAAGGAAAAACAGCTTTTCGTTTCAGTGAGC
TTAAAGACTTTGAGCAACTGGTGGCAAAACTCAGGCTCAAGTGCCGGGCAGCTTCAACTCAAGATGATGT
TAGTACAGAGGTTGCTGTTAGTTCTGACTCGACAGGCCCATCTGAGAATTTTGAGGAGCAGCCTTTGACA
TGTCCAAAGGAATGCAGCAAAACTGTGAACACTGAAGCCTTAATGACAGTATTTCACCCTCAAAATCTGG
AAAATCTTGATTCTAAAATGTTGAAAGAAAAGATGAAGGAGCAATCATGGAACATCTTATTTTCAGAATG
TGGGCGAGGTGTTAGCATGTTCCGGACAAAAAAGACTCGAGATCTGGTGGTAAGAGGGATTCCAGAGACG
TTAAGAGGAGAGCTCTGGATGCTTTTCTCAGGTGCTGTTAATGACATGGCAACAAACCCTGGCTATTATG
CTGAAGTGGTTGAGCAATCCTTAGGGACCTCCAACTTGGCTACTGAAGAAATTGAGCGTGATTTGCGTCG
CTCTCTGCCCGAACATCCAGCATTTCAGAGTGATACTGGCATATCTGCTCTGAGGCGGGTACTGACAGCT
TATGCATATAGGAATCCCAAAATAGGATACTGCCAGGCAATGAACATTTTGACTTCAGTATTGCTCCTAT
ATGCAAAAGAAGAAGAGGCTTTTTGGCTTCTGGTTGCTGTATGTGAACGAATGTTGCCTGATTATTTTAA
TCGTCGAATCATTGGTGCCTTGGTGGACCAGGCAGTGTTTGAAGAACTTATCAGGGATCACCTTCCTCAG
CTGACAGACCACATGACCGACATGACTTTCTTTTCCTCTGTTTCTCTTTCCTGGTTTCTCACACTTTTCA
TTAGTGTGCTACCTATTGAAAGTGCAGTGAATGTGGTGGACTGTTTCTTCTATGATGGAATAAAAGCCAT
TTTACAACTGGGATTGGCAATACTTGACTATAATTTAGACAAACTTCTGACATGTAAAGATGATGCTGAA
GCGGTGACGGCACTAAACAGGTTCTTTGACAATGTCATTAATAAGGATAGCCCACTGCCTTCAAATGTTC
AACAGGGTTCAAATATCAGTAATGAAAAAAGTGATCATACTAAAGTGGATATTACAGATTTGATTAAAGA
GTCCAATGAGAAATATGGTAGTATCCGCTATGAAGATATACATAGCATGCGCTGTCGAAATAGGTTGTAT
GTGATCCAGACCCTGGAAGAGACAACAAAGCAGAATGTGCTACGTGTTGTATCGCAAGACGTGAAAATGA
GCCTTCAGGAACTGGACGAACTTTATGTCATTTTTAAGAAAGAGCTGTTTATATCTTGTTATTGGTATTT
GAGTTGTCCAGGATTGAAGCATCATGACCCCAGCCTGCCATATTTGGAACAATATCAGATTGACTGCCAG
CAATTCAGAGTATTATATCACTTGCTGAGTCCCTGGGCTCATTCTGCAAACAGAGACTCATTGGCTTTAT
GGACATTCCGATTGTTGGATGAGAACTCTGATTGCCTTATAAACTTCAAAGAATTCTCCTCTGCAATAGA
TATAATGTACAATGGAAGTTTTACTGACAAGCTCAAGCTGCTTTTTAAGCTGCATATTCCTCCAGCTTAT
ACTGAAGTGATGTCTAAGACGTCTTCAAAGGGCGATGAGCTTTCAACAGAAGAATTACTTTATTTCAGTC
AGCTCCAGGTTTCTAAGCCTGCAGATGAGAAGGAAACAGAATCGGGAAGAAATAGCCCTGAAAAAGGCAA
AGGAAAAATTGATATTCAAGCCTATTTAAGTCAATGGCAAGATGAGCTTCTTAAAAAAGAAGAAACCATT
AAAGATTTACCAAGAATGAATCAGTCACAATTTATTCAATTTTCAAAGACCCTGTATAATTTATTTCATG
AGGACCCTGAAGAAGAGTCGCTATATCAAGCCATTGCTATTGTAACCAACCTTCTGCTCAGGATGGAAGA
AGTTGGAAGGAAACTCCATAGCCCGGCATCATCAGCCAGTACAGCTCGTGATTCTGGACCCAGTGAAGGG
AATGCAGAGAGCAGTGTGAAGAAAGATCTTCCCTCTCCCAGGGAAGAACATCAGTGGTCGTTTGCATTTG
AGCAGATTCTTGCTTCCCTGTTAAATGAACCAGCCTTGGTGAGGTTTTTTGAGAGACCCTTAGATTTAAA
AGCCAAGCTAGAAAATGCGAAAAGCTCCCAGCTAAGGTCTAGAACCAAGATGTAA

Translation (1114 aa):
MWLKPEEVLLKNALKLWLMERSNEYFVLQRRRGYGEEGGGGLTGLLVGTLDSVLDSTAKVAPFRILHQTP
DSQVYLSIACGANREEITKHWDWLEQNIMKTLSVFDSNEDITNFVQGKIRGLIAEEGKQSFAKEDDPEKF
REALLKFEKSFGLPEQEKLVTYYSCSYWRGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDAISKLEK
TSTVILTESIHVCSQGENHYFSMFLHINETYLLMEQLANYAIKRLFDKETFDNDPVLDDPLQITKRGLEY
RAHSEQFKAFFRLPKEETLKEVHECFLWVPFSHFSSHGKMCISENYICFASQDGNLCSVIIPLREVLAID
KTDDSNRSVIISIKGKTAFRFSELKDFEQLVAKLRLKCRAASTQDDVSTEVAVSSDSTGPSENFEEQPLT
CPKECSKTVNTEALMTVFHPQNLENLDSKMLKEKMKEQSWNILFSECGRGVSMFRTKKTRDLVVRGIPET
LRGELWMLFSGAVNDMATNPGYYAEVVEQSLGTSNLATEEIERDLRRSLPEHPAFQSDTGISALRRVLTA
YAYRNPKIGYCQAMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNRRIIGALVDQAVFEELIRDHLPQ
LTDHMTDMTFFSSVSLSWFLTLFISVLPIESAVNVVDCFFYDGIKAILQLGLAILDYNLDKLLTCKDDAE
AVTALNRFFDNVINKDSPLPSNVQQGSNISNEKSDHTKVDITDLIKESNEKYGSIRYEDIHSMRCRNRLY
VIQTLEETTKQNVLRVVSQDVKMSLQELDELYVIFKKELFISCYWYLSCPGLKHHDPSLPYLEQYQIDCQ
QFRVLYHLLSPWAHSANRDSLALWTFRLLDENSDCLINFKEFSSAIDIMYNGSFTDKLKLLFKLHIPPAY
TEVMSKTSSKGDELSTEELLYFSQLQVSKPADEKETESGRNSPEKGKGKIDIQAYLSQWQDELLKKEETI
KDLPRMNQSQFIQFSKTLYNLFHEDPEEESLYQAIAIVTNLLLRMEEVGRKLHSPASSASTARDSGPSEG
NAESSVKKDLPSPREEHQWSFAFEQILASLLNEPALVRFFERPLDLKAKLENAKSSQLRSRTKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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