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Report for CCDS40584.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40584.2 Reviewed, update pending Mus musculus 9 Ccdc15 23 108 98 CCDS HistoryNCBI Gene:245902Re-query CCDS DB by CCDS ID:40584.2Re-query CCDS DB by GeneID:245902See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 40584.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213633.1 ENSMUSP00000150207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213633.1Link to Ensembl Protein Viewer:ENSMUSP00000150207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213633Re-query CCDS DB by Protein ID:ENSMUSP00000150207
Original member Current member NCBI NM_001081429.2 NP_001074898.2 Pending alive Link to Nucleotide Sequence:NM_001081429.2Link to Protein Sequence:NP_001074898.2Re-query CCDS DB by Nucleotide ID:NM_001081429Re-query CCDS DB by Protein ID:NP_001074898Link to BLAST:NP_001074898.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074898.2 810 Q8C9M2-1 810 100% 0 0

Chromosomal Locations for CCDS 40584.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37276562 37276565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37277358 37277481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37278967 37279115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37279574 37279750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37302880 37302983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37304310 37304405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37311318 37311428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37313377 37313499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37314287 37314352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37315159 37315887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37316408 37316527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37320397 37320510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37342436 37342621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37343884 37344033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37347738 37347917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGCCAGGAGGTATGGCGCCCCTCAAGAAGCCTCGGAATCCCACAAAATTGCCCCTGGCTTTAAATCCCA
CGAAGAGCAAGGACGTTTTGGCAGTGCTGGCTGAGAGGAACCAGGCCATAATACCAGTTGGGGCTTGGGT
GGAACCTGCCTCACCAAATTGGTCGGGAATTCCAGCACATACTTCAGCATACGTAGTTGAAGAGGAAATA
AAGGAACAGCAACGAAGAAAGCAAGAGTCTCTGAGACATTTTCAGAGACAAGTCAGGCACCGGGTCAATC
AGCGGGTTAAGCTGAGGAAAAAGCAACAACTTCACAAGTCTTACAAAGCAGCAGAAAAGGAAGGCTCTAT
AGCCATGCAGTATTCAGATTTGGCACATTTATCTTCTAAAAGGACAAGTGTTTTCCCTAGCAATTTGAAT
GCTGCTGTTGGAAGGTTTAGGTTACCCACTTCCCAGGTGCTTGGTGATGCAATAGAAGATGGAGAGAATC
AGTTGTTTCAACAACAAGCTCAAGCTCTTAGTCAAACTATGAAACAGGCACGTCACCAGCTGGCATCCTT
TAAAACTGTGAGTGAAAAAAAGACACCAGTGCTTCCAAATGGTGGAAGGAAAGGTTGTCCCACCCAAGAG
GGCCTTGGCTGTGGGAAAATTTCATTTGTTGCTGTAAGTGAGGAGAGAGATGCTTTGTTTGTGAGCTGCC
AGCAGGATTTCCTTTCTGAAGACAAAGAAAAGGCTTTCAGCAAAGTTCAGAAAGTAAAATTCAAAAATCC
CTTATCTGTTGTGATAAAAGAAGATGAACGAAAGCAATTACATCCTCATAGCCTTCAGGCTGTTCTTCCA
GAAGCCCAGGATTATTTTGTAGAAGTTCAAAGCGGCCTTCCAGAATCTCAGAGTGATGTGATAGACGTCC
AGAATGTTGAGCCTAAAGCTTCAAGAATTGAACCTAAAACTCTAGGTGTTGAGCCAGACACCCAGGCCAC
TGGTGTGGAGTGTCAGACTACAGAGCCAGAAGGCCAGGCTGTTAAGACGGGGATTCAGGATGTTCCTAAA
GTCCAGACTGTTGAGCTAGATGGCAATACTGAGCTGGAAGCCCAGGATTTTCTACCCTCGCACCAGGCCT
TTCTATCCAGAGACACAGATTGTCTACCCAATTGTCAATACCAGGATTCTTTACCCAAAGGTCACTGTGT
TCTCCCTAATTACTGGAATGTTTTACCTAAATACCAGAACCAGCATTTTCTACCAGTAGACCAGGAGTTT
CTACCTAGAAACCAACTTGCTTTACCCAAAGAACAGAATCACCCACTTCAATGTCAGAAGCAGGATCTCC
TACCTAGAGAACAGTTTCCCCTGCTGCTGAGACACCAGGACCAAAGAGAGCCACATGTTCTTCCTAAATG
TCAGGAGCATGATGTTCTTTCCAAAGCCCAGAATTATCTACACAATTATCAGGAGCAGGATCTTCAACTC
CAAAACCAGGAAGTAAACTCTAAGGAGCCACTCTCTGATATAACAGATGGGAAAGGGAGAGAAATATTTT
CTCTGGACATGTTTTCCAAGAAACCCTCAACTTTTATGAGAAGAGAGAGGGGGGATGAGGAGTTACCTCT
GGACTCTCCTCAGTGTGCTCCACCTCAGATCCAGGACCAAGTCTTCCTTAGAGAACAGAGCCAGCAGCCC
TCTGTTAGGACAGCTGAACGGTGGCAAGAGGATTTGTATCTCAGTGGCCATGAATGTCTTCCACCCAGAC
AACGGAGAGACACGTGCAGCAGGCAACAGCAGGTCTATGAGGAGTATCGGTCGGGACTGAGCACTGAACA
GCAGGCTCTGCTGGCATTTCAGTCTGGAGTGGATCAAGAAGAAGATAAAAAAGAGCGTCAAAAGCAATAT
CTGAGACACAGGAGGCTTTTCATGGATATTGAGAGAGAACAAGTGAAAGAACAGAACAGACAAAGGGAAC
GAAAGAGGAGGATTGAAAAAATTAAGAAAAAGAAAGAACAACAACGCTATGCTGAAGAGCAGAGACTCCT
AAGAATGAACTGTCATGAAGAACCTTATTCAGAAGAGAAGATAAGTGATGTGTTAGCCCAGTTACAACTG
GAAGAAATAAAAGGAGCCAGAGAAAAACAGCAACAGAGAGAAAAAGAGTACATAAGATATGTAGAAGCTT
TACGAGCCCAGGTCCAGGAGAAGATGAAGCTTTATAATATCACTTTACCTCCATTATGCTGTTGTGGTCC
TGATTTTTGGGATGCTCATCCTGATACCTGTGCCAACAATTGCATTTTCTATAAAAACTACAGGGCATAT
AATCGGGCATTGCATTCAGTCATCAATTCTTCTGATATCTCTGAGGGGAACGCAACTCTTCGAAATGCCA
TTCGTAATTTTGCTTCTGCACATAGACGGACTCCAAAACAAAGTCTCCACTAA

Translation (810 aa):
MPGGMAPLKKPRNPTKLPLALNPTKSKDVLAVLAERNQAIIPVGAWVEPASPNWSGIPAHTSAYVVEEEI
KEQQRRKQESLRHFQRQVRHRVNQRVKLRKKQQLHKSYKAAEKEGSIAMQYSDLAHLSSKRTSVFPSNLN
AAVGRFRLPTSQVLGDAIEDGENQLFQQQAQALSQTMKQARHQLASFKTVSEKKTPVLPNGGRKGCPTQE
GLGCGKISFVAVSEERDALFVSCQQDFLSEDKEKAFSKVQKVKFKNPLSVVIKEDERKQLHPHSLQAVLP
EAQDYFVEVQSGLPESQSDVIDVQNVEPKASRIEPKTLGVEPDTQATGVECQTTEPEGQAVKTGIQDVPK
VQTVELDGNTELEAQDFLPSHQAFLSRDTDCLPNCQYQDSLPKGHCVLPNYWNVLPKYQNQHFLPVDQEF
LPRNQLALPKEQNHPLQCQKQDLLPREQFPLLLRHQDQREPHVLPKCQEHDVLSKAQNYLHNYQEQDLQL
QNQEVNSKEPLSDITDGKGREIFSLDMFSKKPSTFMRRERGDEELPLDSPQCAPPQIQDQVFLREQSQQP
SVRTAERWQEDLYLSGHECLPPRQRRDTCSRQQQVYEEYRSGLSTEQQALLAFQSGVDQEEDKKERQKQY
LRHRRLFMDIEREQVKEQNRQRERKRRIEKIKKKKEQQRYAEEQRLLRMNCHEEPYSEEKISDVLAQLQL
EEIKGAREKQQQREKEYIRYVEALRAQVQEKMKLYNITLPPLCCCGPDFWDAHPDTCANNCIFYKNYRAY
NRALHSVINSSDISEGNATLRNAIRNFASAHRRTPKQSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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