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Report for CCDS40502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40502.1 Public Mus musculus 8 Banp 23 108 98 CCDS HistoryNCBI Gene:53325Re-query CCDS DB by CCDS ID:40502.1Re-query CCDS DB by GeneID:53325See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170857.7 ENSMUSP00000132095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170857.7Link to Ensembl Protein Viewer:ENSMUSP00000132095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170857Re-query CCDS DB by Protein ID:ENSMUSP00000132095
Original member Current member NCBI NM_016812.4 NP_058092.2 Accepted alive Link to Nucleotide Sequence:NM_016812.4Link to Protein Sequence:NP_058092.2Re-query CCDS DB by Nucleotide ID:NM_016812Re-query CCDS DB by Protein ID:NP_058092Link to BLAST:NP_058092.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058092.2 548 Q8VBU8-1 548 100% 0 0

Chromosomal Locations for CCDS 40502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121974496 121974565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121975900 121975991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121978555 121978754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121989955 121990071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121991528 121991703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121997040 121997279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122000964 122001131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122005552 122005682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122007091 122007162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122007753 122007791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122020519 122020644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122024003 122024146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122025564 122025635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGATGTCAGAGCAGGACCTGGCGGATGTGGTTCAGATTGCAGTGGAAGACCTGAGCCCTGATCACCCAG
TTGTTTTGGAGAATCATGTCGTGACAGATGATGATGAACCTGCCTTGAAGCGCCAGCGACTAGAGATCAA
TTGCCAGGACCCCTCTATAAAGTCTTTCCTGTACTCTATTAACCAGACGATATGTTTGCGGTTGGATAGC
ATTGAGGCCAAGCTGCAAGCTCTCGAGGCCACTTGCAAATCTCTGGAAGAGAAGCTAGACCTGGTCACCA
ATAAACAGCACAGTCCCATCCAGGTCCCCATGGTGGCAGGTTCCCCACTTGGCGCCACCCAGACCTGCAA
CAAAGTGCGATGCGTCGTCCCCCAGACTACAGTAATACTCAACAATGATCGGCAGAACGCCATTGTAGCC
AAGATGGAAGACCCATTGAGCAACAGGGCACCGGATTCCCTGGAAAATATCATTAGCAACGCTGTTCCTG
GGCGTCGGCAGAACACCATCGTGGTGAAAGTGCCTGGTCAGGACGACAGCCACAACGAAGATGGGGAGAG
CGGGTCAGAGGCCAGTGACTCCGTGTCTAACTGTGGCCAGCCAGGAAGCCAGAACATTGGAAGCAACGTC
ACACTCATCACCCTGAACTCCGAAGAGGACTATCCCAATGGCACCTGGCTGGGCGATGAGAATAACCCTG
AGATGCGGGTACGCTGTGCCATCATCCCTTCCGACATGTTGCACATCAGCACCAACTGTCGCACGGCCGA
GAAGATGGCGCTGACACTGCTGGACTACCTGTTCCACCGTGAGGTGCAGGCTGTGTCCAACTTGTCCGGC
CAGGGCAAGCACGGGAAGAAGCAGCTGGACCCCCTCACCATCTACGGCATCCGGTGTCACCTCTTCTATA
AATTTGGAATCACGGAATCTGACTGGTATCGGATCAAGCAGAGCATTGACTCCAAGTGCCGGACAGCCTG
GCGGCGGAAGCAGCGAGGCCAGAGCCTGGCGGTCAAGAGCTTCTCTCGGAGGACGCCATCCTCATCCTCT
TACAGTGCCTCAGAGACCATGATGGGAACCCCTCCTCCCACCAGTGAGCTACAGCAGTCACAGCCACAGG
CCCTACACTACGCCCTGGCCAACGCCCAGCAGGTCCAGATCCACCAGATTGGGGAGGATGGACAGGTGCA
AGTAATCCCACAGGGCCACCTCCACATTGCCCAGGTGCCTCAAGGGGAGCAGGTGCAGATCACACAGGAC
AGCGAGGGCAATCTGCAGATCCATCATGTGGGTCAGGATGGCCAGTCGTGGGGCCTGTGCCAGAATCCCA
TTCCTGTCAGCGGTGACTCAGTGGCCCAGGCTAATCCCTCCCAGCTTTGGCCTCTGGGAGGAGACACACT
TGATCTGCCTGCTGGAAATGAAATGATCCAGGTACTGCAGGGTGCTCAGCTCATAGCCGTGGCCTCTTCA
GACCCTGCTGCTACAGGAGTAGATGGGTCGCCTCTCCAGGGCAGTGACATTCAGGTTCAGTATGTCCAGC
TGGCGCCTGTGAGTGACCACACAGCCGCAGCGCAGACCGCAGAGGCCCTGCAGCCCACTCTGCAGCCCGA
CATGCAGCTTGAACATGGGGCCATCCAGATCCAGTGA

Translation (548 aa):
MMSEQDLADVVQIAVEDLSPDHPVVLENHVVTDDDEPALKRQRLEINCQDPSIKSFLYSINQTICLRLDS
IEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVRCVVPQTTVILNNDRQNAIVA
KMEDPLSNRAPDSLENIISNAVPGRRQNTIVVKVPGQDDSHNEDGESGSEASDSVSNCGQPGSQNIGSNV
TLITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLSG
QGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPSSSS
YSASETMMGTPPPTSELQQSQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQITQD
SEGNLQIHHVGQDGQSWGLCQNPIPVSGDSVAQANPSQLWPLGGDTLDLPAGNEMIQVLQGAQLIAVASS
DPAATGVDGSPLQGSDIQVQYVQLAPVSDHTAAAQTAEALQPTLQPDMQLEHGAIQIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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