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Report for CCDS40284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40284.1 Public Mus musculus 8 Defb2 23 108 98 CCDS HistoryNCBI Gene:13215Re-query CCDS DB by CCDS ID:40284.1Re-query CCDS DB by GeneID:13215See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006745.3 ENSMUSP00000006745.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006745.3Link to Ensembl Protein Viewer:ENSMUSP00000006745.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000006745Re-query CCDS DB by Protein ID:ENSMUSP00000006745
Original member NCBI NM_010030.1 NP_034160.1 Updated not alive Link to Nucleotide Sequence:NM_010030.1Link to Protein Sequence:NP_034160.1Re-query CCDS DB by Nucleotide ID:NM_010030Re-query CCDS DB by Protein ID:NP_034160
Current member NCBI NM_010030.2 NP_034160.1 Accepted alive Link to Nucleotide Sequence:NM_010030.2Link to Protein Sequence:NP_034160.1Re-query CCDS DB by Nucleotide ID:NM_010030Re-query CCDS DB by Protein ID:NP_034160Link to BLAST:NP_034160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034160.1 71 P82020 71 100% 0 0

Chromosomal Locations for CCDS 40284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 21839959 21840019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 21843272 21843426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (216 nt):
ATGAGGACTCTCTGCTCTCTGCTGCTGATATGCTGCCTCCTTTTCTCATATACCACTCCAGCTGTTGGAA
GTTTAAAAAGTATTGGATACGAAGCAGAACTTGACCACTGCCACACCAATGGAGGGTACTGTGTCAGAGC
CATTTGTCCTCCTTCTGCCAGGCGTCCTGGGAGCTGTTTCCCAGAGAAGAACCCCTGTTGCAAGTACATG
AAATGA

Translation (71 aa):
MRTLCSLLLICCLLFSYTTPAVGSLKSIGYEAELDHCHTNGGYCVRAICPPSARRPGSCFPEKNPCCKYM
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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