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Report for CCDS40193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40193.1 Public Mus musculus 7 Lsp1 23 108 98 CCDS HistoryNCBI Gene:16985Re-query CCDS DB by CCDS ID:40193.1Re-query CCDS DB by GeneID:16985See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038946.8 ENSMUSP00000040637.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038946.8Link to Ensembl Protein Viewer:ENSMUSP00000040637.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000038946Re-query CCDS DB by Protein ID:ENSMUSP00000040637
Original member NCBI NM_019391.3 NP_062264.1 Updated not alive Link to Nucleotide Sequence:NM_019391.3Link to Protein Sequence:NP_062264.1Re-query CCDS DB by Nucleotide ID:NM_019391Re-query CCDS DB by Protein ID:NP_062264
Current member NCBI NM_019391.4 NP_062264.1 Accepted alive Link to Nucleotide Sequence:NM_019391.4Link to Protein Sequence:NP_062264.1Re-query CCDS DB by Nucleotide ID:NM_019391Re-query CCDS DB by Protein ID:NP_062264Link to BLAST:NP_062264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062264.1 328 P19973-2 328 100% 0 0

Chromosomal Locations for CCDS 40193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142472303 142472364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142484479 142484625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142486347 142486505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142488419 142488515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142488848 142488940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489129 142489172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489325 142489406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142489900 142490034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142490345 142490422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142490559 142490648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGAATGGCCCCGCACTCCTGAGGAGAAATGCTAGCAAACGGGGCCTGGAGAAGCTGCTGAGGCTCACAA
CTCAGTGGAGAGAAGAAGACGAGGAAGAGGCTGCCCGTGAGCAGCGTCAACGGGAGCGAGAGAGGCAGCT
ACAGGACCAGGACAAAGATAAAGAAGATGATGGTGGCCATTCCCTGGAACAGCCAGGACAGCAGACACTC
ATCAGCCTGAAGTCCTCTGAACTGGATGAAGATGAGGGTTTTGGTGACTGGTCCCAAAAGCCGGAGCCAC
GGCAGCAATTCTGGGGGAATGAGGGGACTGCAGAAGGGACTGAACCCTCTCAAAGCGAGAGACCAGAGGA
GAAACAAACAGAGGAGAGTTCTCACCAAGCCAAAGTCCACTTGGAGGAGTCAAACCTGAGCTACAGGGAG
CCCGATCCAGAGGATGCTGTTGGGGGTTCTGGGGAGGCGGAAGAGCATCTGATACGTCATCAGGTCAGGA
CCCCCAGCCCTTTGGCCTTAGAAGACACCGTTGAGCTGAGTTCACCTCCCCTGAGCCCTACCACCAAACT
GGCTGATAGGACCGAGTCCCTGAACCGCTCCATTAAAAAGAGCAACAGTGTGAAGAAGTCTCAACCAACC
TTGCCCATTTCCACAATTGATGAACGCCTGCAGCAGTATACCCAGGCCACTGAGTCTTCTGGCCGAACTC
CTAAGCTGTCCCGCCAGCCCTCCATAGAGCTGCCCAGCATGGCCGTAGCCAGTACCAAGACTCTTTGGGA
AACAGGAGAAGTGCAGAGTCAGTCTGCTTCTAAGACACCCTCCTGCCAGGATATAGTAGCTGGAGACATG
AGCAAGAAAAGTCTGTGGGAGCAGAAAGGAGGCTCCAAGATCTCATCCACCATCAAGAGCACCCCATCTG
GAAAGCGGTACAAGTTCGTGGCCACTGGACATGGGAAGTACGAGAAAGTACTTGTGGATGAGGGCTCAGC
ACCATAG

Translation (328 aa):
MNGPALLRRNASKRGLEKLLRLTTQWREEDEEEAAREQRQRERERQLQDQDKDKEDDGGHSLEQPGQQTL
ISLKSSELDEDEGFGDWSQKPEPRQQFWGNEGTAEGTEPSQSERPEEKQTEESSHQAKVHLEESNLSYRE
PDPEDAVGGSGEAEEHLIRHQVRTPSPLALEDTVELSSPPLSPTTKLADRTESLNRSIKKSNSVKKSQPT
LPISTIDERLQQYTQATESSGRTPKLSRQPSIELPSMAVASTKTLWETGEVQSQSASKTPSCQDIVAGDM
SKKSLWEQKGGSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSAP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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