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Report for CCDS40185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40185.1 Public Mus musculus 7 Deaf1 23 108 98 CCDS HistoryNCBI Gene:54006Re-query CCDS DB by CCDS ID:40185.1Re-query CCDS DB by GeneID:54006See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080553.8 ENSMUSP00000079395.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080553.8Link to Ensembl Protein Viewer:ENSMUSP00000079395.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000080553Re-query CCDS DB by Protein ID:ENSMUSP00000079395
Original member Current member NCBI NM_016874.3 NP_058570.1 Accepted alive Link to Nucleotide Sequence:NM_016874.3Link to Protein Sequence:NP_058570.1Re-query CCDS DB by Nucleotide ID:NM_016874Re-query CCDS DB by Protein ID:NP_058570Link to BLAST:NP_058570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058570.1 566 Q9Z1T5-1 566 100% 0 0

Chromosomal Locations for CCDS 40185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141297512 141297616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141301600 141301689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141310762 141311009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141313220 141313348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141314334 141314462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141314862 141314988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141321110 141321175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141321926 141322065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141322462 141322608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141322890 141323019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141324082 141324179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141327279 141327570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGGAGGACTCGGACTCGGCGGCAAAACAGCTGGGCCTGGCCGAGGCGGCAGCTGTGGCGGCCGCTGCCG
CGGTGGCGGCGGCCGCCGCGGCCGCAGCGGAAAGCGAGGCGGAGGAGCCGGTGTTAAGCAGAGACGAGGA
CTCGGAGGAGGACGCAGACTCCGAGGCGGAGCGCGAGACGCGGCGGGTCACCGCTGTGGCGGTGATGGCG
GCCGAATCTGGGCACATGGATATGGGTACCGAGGCTCTGCCCAGCCCCGATGAGGCCGCCGCCGCCGCCG
CCGCCTTCGCAGAAGTGACCACAGTGACTGTGGCCAACGTGGGGTCCTCTGCAGATAACGTCTTCACAAC
ATCAGTGGCAAACGCAGCATCGATATCAGGACATGTCCTGTCTGGTAGGACAGCCCTGCAGATCGGTGAC
AGCCTGAACACTGAAAAAGCCACACTAATAGTTGTACACACAGATGGGAGCATTGTGGAGACCACTGGGC
TGAAGGGCCCAGCAGCACCTCTCACTCCAGGTCCCCAGTCTCCTCCTACCCCACTGGCACCTGGCCAGGA
GAAAGGTGGTACCAAGTACAACTGGGACCCTTCGGTGTATGACAGCGAGTTGCCTGTGCGCTGTCGGAAC
ATCAGTGGCACGCTCTACAAGAGTAGGCTCGGCTCAGGTGGCCGGGGCCGGTGTATCAAGCAGGGAGAAA
ACTGGTACAGCCCAACTGAGTTTGAAGCTATGGCAGGAAGAGCCAGCAGCAAGGACTGGAAGAGAAGCAT
CCGCTATGCTGGCAGACCCCTGCAGTGCCTCATTCAGGATGGTATTTTGAACCCTCACGCTGCCTCCTGT
ACCTGTGCCGCCTGTTGTGATGACATGACTCTGAGTGGCCCTGTCAGGCTCTTCGTCCCTTATAAAAGGC
GCAAGAAAGAGAATGAGCTGCCCACAACTCCAGTGAAGAAGGATTCCCCCAAGAACATCACCCTGCTTCC
TGCCACGGCGGCCACCACCTTCACTGTGACACCCTCAGGACAGATCACTACCTCTGGAGCACTGACCTTT
GACAGAGCATCCACTGTAGAGGCCACTGCTGTCATCTCTGAGAGCCCAGCCCAAGGTGATGTCTTTGCAG
GAGCCACAGTGCAAGAGGCAGGTGTGCAGCCTCCCTGCAGGGTTGGCCACCCTGAACCCCACTACCCTGG
CTATCAGGACAGCTGCCAGATTGCCCCGTTTCCAGAAGCTGCATTGCCAACATCACACCCCAAAATTGTC
CTGACATCGCTGCCCGCATTGGCCGTGCCACCGTCCACCCCCACCAAAGCTGTCTCTCCCACCGTGGTCA
GTGGGCTGGAGATGTCAGAACATCGGAGCTGGCTGTACCTGGAAGAGATGGTCAACTCCCTACTCAACAC
AGCTCAGCAGCTGAAGACGCTGTTTGAACAAGCCAAGCAGGCGAGCTCTTGCAGGGAAGCTGCTGTGACC
CAGGCGAGAATGCAGGTTGATACAGAGAGGAAAGAGCAGTCATGTGTCAACTGCGGCCGGGAGGCCATGA
GTGAGTGTACCGGCTGCCACAAGGTTAACTACTGCTCTACGTTCTGCCAGCGCAAGGACTGGAAAGACCA
TCAGCATGTGTGTGGCCAGTCAGCGTCTGTCACTGTCCAGGCTGATGACGTCCATGTTGAAGAAAGTGTG
ATAGAAAAAGTTGCTGTTTGA

Translation (566 aa):
MEDSDSAAKQLGLAEAAAVAAAAAVAAAAAAAAESEAEEPVLSRDEDSEEDADSEAERETRRVTAVAVMA
AESGHMDMGTEALPSPDEAAAAAAAFAEVTTVTVANVGSSADNVFTTSVANAASISGHVLSGRTALQIGD
SLNTEKATLIVVHTDGSIVETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRN
ISGTLYKSRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAASC
TCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPSGQITTSGALTF
DRASTVEATAVISESPAQGDVFAGATVQEAGVQPPCRVGHPEPHYPGYQDSCQIAPFPEAALPTSHPKIV
LTSLPALAVPPSTPTKAVSPTVVSGLEMSEHRSWLYLEEMVNSLLNTAQQLKTLFEQAKQASSCREAAVT
QARMQVDTERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHVCGQSASVTVQADDVHVEESV
IEKVAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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