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Report for CCDS40086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40086.1 Public Mus musculus 7 Rnf141 23 108 98 CCDS HistoryNCBI Gene:67150Re-query CCDS DB by CCDS ID:40086.1Re-query CCDS DB by GeneID:67150See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40086.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106682.9 ENSMUSP00000102293.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106682.9Link to Ensembl Protein Viewer:ENSMUSP00000102293.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106682Re-query CCDS DB by Protein ID:ENSMUSP00000102293
Original member Current member EBI ENSMUST00000177236.7 ENSMUSP00000134781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177236.7Link to Ensembl Protein Viewer:ENSMUSP00000134781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177236Re-query CCDS DB by Protein ID:ENSMUSP00000134781
Original member NCBI NM_025999.3 NP_080275.2 Updated not alive Link to Nucleotide Sequence:NM_025999.3Link to Protein Sequence:NP_080275.2Re-query CCDS DB by Nucleotide ID:NM_025999Re-query CCDS DB by Protein ID:NP_080275
Current member NCBI NM_025999.4 NP_080275.2 Accepted alive Link to Nucleotide Sequence:NM_025999.4Link to Protein Sequence:NP_080275.2Re-query CCDS DB by Nucleotide ID:NM_025999Re-query CCDS DB by Protein ID:NP_080275Link to BLAST:NP_080275.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080275.2 230 Q99MB7-1 230 100% 0 0

Chromosomal Locations for CCDS 40086.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 110816700 110816850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110821254 110821361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110825217 110825398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110833737 110833845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110837077 110837219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGGACAGCAAATTTCGGATCAGACGCAGTTGGTTATTAACAAGTTACCAGAAAAGGTAGCAAAGCACG
TCACCTTGGTTCGAGAAAGTGGCTCCTTAACTTACGAAGAGTTTCTTGGGAGAGTAGCTGAACTCAATGA
TGTAACTGCTAAGGTGGCTGCTGGCCAGGAAAAGCATCTTCTCTTTGAGGTACAACCTGGGTCTGACTCC
TCTGCCTTCTGGAAAGTAGTTGTACGGGTGGTCTGTACCAAGATTAACAAAAGCAGTGGCATTGTGGAAG
CATCGCGGATCATGAATTTGTACCAGTTTATTCAGCTCTATAAAGACATCACAAGCCAAGCTGCTGGAGT
GCTGGCTCAGAGCTCCACCTCTGAAGAGCCTGATGAGAACCCATCCTCGGTCACATCTTGCCAGGCTAGT
CTATGGATGGGCAGGGTGAAGCAGCTGACTGATGAGGAGGAGTGTTGTATCTGCATGGACGGGCGAGCTG
ACCTCATCCTGCCCTGTGCTCACAGCTTCTGTCAGAAGTGCATTGATAAATGGAGTGATCGACACAGGAA
CTGCCCCATTTGTCGCCTACAGATGACTGGAGCAAATGAATCATGGGTGGTGTCAGATGCACCCACTGAA
GATGACATGGCTAACTATATTCTTAACATGGCTGATGAGGCAGGCCAGCCCCACAGGCCATGA

Translation (230 aa):
MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVAAGQEKHLLFEVQPGSDS
SAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQSSTSEEPDENPSSVTSCQAS
LWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSDAPTE
DDMANYILNMADEAGQPHRP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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