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Report for CCDS39658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39658.1 Public Mus musculus 6 Clec9a 23 108 98 CCDS HistoryNCBI Gene:232414Re-query CCDS DB by CCDS ID:39658.1Re-query CCDS DB by GeneID:232414See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088075.7 ENSMUSP00000085394.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088075.7Link to Ensembl Protein Viewer:ENSMUSP00000085394.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088075Re-query CCDS DB by Protein ID:ENSMUSP00000085394
Original member Current member NCBI NM_172732.3 NP_766320.2 Accepted alive Link to Nucleotide Sequence:NM_172732.3Link to Protein Sequence:NP_766320.2Re-query CCDS DB by Nucleotide ID:NM_172732Re-query CCDS DB by Protein ID:NP_766320Link to BLAST:NP_766320.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766320.2 238 Q8BRU4-1 238 100% 0 0

Chromosomal Locations for CCDS 39658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129408955 129409045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129410275 129410355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129415221 129415361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129419482 129419633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129421044 129421162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129422226 129422358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGCATGCGGAAGAAATATATACCTCTCTTCAGTGGGACATTCCTACCTCAGAGGCCTCTCAGAAGTGCC
AATCCCCTAGCAAATGTTCAGGAGCATGGTGTGTTGTGACGATGATTTCCTGTGTGGTCTGTATGGGCTT
GTTAGCAACGTCCATTTTCTTGGGCATCAAGTTCTTCCAGGTATCCTCTCTTGTCTTGGAGCAGCAGGAA
AGACTCATCCAACAGGACACAGCATTGGTGAACCTTACACAGTGGCAGAGGAAATACACACTGGAATACT
GCCAAGCCTTACTGCAGAGATCTCTCCATTCAGGTAGTGACTGCAGCCCTTGTCCACACAACTGGATTCA
GAATGGAAAAAGTTGTTACTATGTCTTTGAACGCTGGGAAATGTGGAACATCAGTAAGAAGAGCTGTTTA
AAAGAGGGCGCTAGTCTCTTTCAAATAGACAGCAAAGAAGAAATGGAGTTCATCAGCAGTATAGGGAAAC
TCAAAGGAGGAAATAAATATTGGGTGGGAGTGTTTCAAGATGGAATCAGTGGATCTTGGTTCTGGGAAGA
TGGCTCTTCTCCTCTCTCTGACTTGTTGCCAGCAGAAAGACAGCGATCAGCCGGCCAGATCTGTGGATAC
CTCAAAGATTCTACTCTCATCTCAGATAAGTGCGATAGCTGGAAATATTTTATCTGTGAGAAGAAGGCAT
TTGGATCCTGCATCTGA

Translation (238 aa):
MHAEEIYTSLQWDIPTSEASQKCQSPSKCSGAWCVVTMISCVVCMGLLATSIFLGIKFFQVSSLVLEQQE
RLIQQDTALVNLTQWQRKYTLEYCQALLQRSLHSGSDCSPCPHNWIQNGKSCYYVFERWEMWNISKKSCL
KEGASLFQIDSKEEMEFISSIGKLKGGNKYWVGVFQDGISGSWFWEDGSSPLSDLLPAERQRSAGQICGY
LKDSTLISDKCDSWKYFICEKKAFGSCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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