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Report for CCDS39614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39614.1 Public Mus musculus 6 Slc25a18 23 108 98 CCDS HistoryNCBI Gene:71803Re-query CCDS DB by CCDS ID:39614.1Re-query CCDS DB by GeneID:71803See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112682.3 ENSMUSP00000108302.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112682.3Link to Ensembl Protein Viewer:ENSMUSP00000108302.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112682Re-query CCDS DB by Protein ID:ENSMUSP00000108302
Original member NCBI NM_001081048.2 NP_001074517.1 Updated not alive Link to Nucleotide Sequence:NM_001081048.2Link to Protein Sequence:NP_001074517.1Re-query CCDS DB by Nucleotide ID:NM_001081048Re-query CCDS DB by Protein ID:NP_001074517
Current member NCBI NM_001081048.3 NP_001074517.1 Accepted alive Link to Nucleotide Sequence:NM_001081048.3Link to Protein Sequence:NP_001074517.1Re-query CCDS DB by Nucleotide ID:NM_001081048Re-query CCDS DB by Protein ID:NP_001074517Link to BLAST:NP_001074517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074517.1 320 Q9DB41-1 320 100% 0 0

Chromosomal Locations for CCDS 39614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120784503 120784537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120786034 120786156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120786283 120786338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120788194 120788284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120789353 120789471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120791948 120792113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120792372 120792526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120792910 120792985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120793502 120793643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGATCGCCTGCAGGATGTCCAGCCAGGACCTGAGCATCTCCGCAAAACTCATCAATGGAGGTATAGCAG
GTCTTGTGGGGGTGACCTGCGTGTTTCCCATTGACCTTGCCAAGACCCGACTACAGAACCAGCAGGGGAA
AGATGTGTACAGAGGAATGACAGATTGCCTGATGAAGACTGCACGTGCTGAGGGCTTCCTGGGCATGTAC
CGAGGGGCTGCAGTAAACCTCACCCTGGTCACTCCAGAGAAGGCAATCAAGCTGGCAGCCAATGACTTCT
TGCGGCAGCTGCTCATGCAAGATGGGACGCAGCGGAACCTGAAGATGGAGATGCTGGCCGGGTGTGGGGC
TGGAATATGCCAGGTGGTGATTACCTGTCCCATGGAAATGCTCAAGATTCAGCTGCAGGATGCTGGCCGC
TTAGCTGTCTGTCATCAGGCTTCTGCCTCAGCCACACCCACCTCCCGGCCCTACAGCACTGGCTCGACTT
CCACCCACAGGCGCCCATCGGCCACCCTCATTGCCCGGGAGCTGCTCCGCACTCAGGGCCTCTCTGGTCT
CTACAGGGGCCTGGGTGCCACGCTCCTCAGGGACATTCCCTTCTCCATCATCTACTTCCCTTTGTTTGCA
AACCTGAACCAACTCGGAGTCAGCGAGCTCACCGGCAAGGCCTCCTTCACACACTCCTTTGTAGCAGGCT
GCACAGCAGGTTCTGTGGCAGCGGTAGCCGTCACCCCTCTGGATGTTCTGAAGACTCGAATTCAGACCCT
CAAGAAAGGCCTGGGTGAGGACACCTACAGCGGAGTCACTGACTGTGCCAGGAAGCTCTGGACACAGGAG
GGGCCAGCAGCCTTCATGAAAGGAGCAGGCTGCCGTGCCCTGGTCATAGCCCCCCTCTTTGGGATCGCCC
AGGGCGTCTACTTCATTGGCATCGGAGAGCGCATCTTGAAGTGCTTTGAGTAA

Translation (320 aa):
MIACRMSSQDLSISAKLINGGIAGLVGVTCVFPIDLAKTRLQNQQGKDVYRGMTDCLMKTARAEGFLGMY
RGAAVNLTLVTPEKAIKLAANDFLRQLLMQDGTQRNLKMEMLAGCGAGICQVVITCPMEMLKIQLQDAGR
LAVCHQASASATPTSRPYSTGSTSTHRRPSATLIARELLRTQGLSGLYRGLGATLLRDIPFSIIYFPLFA
NLNQLGVSELTGKASFTHSFVAGCTAGSVAAVAVTPLDVLKTRIQTLKKGLGEDTYSGVTDCARKLWTQE
GPAAFMKGAGCRALVIAPLFGIAQGVYFIGIGERILKCFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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