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Report for CCDS39591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39591.1 Public Mus musculus 6 Lhfpl4 23 108 98 CCDS HistoryNCBI Gene:269788Re-query CCDS DB by CCDS ID:39591.1Re-query CCDS DB by GeneID:269788See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162280.1 ENSMUSP00000124470.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162280.1Link to Ensembl Protein Viewer:ENSMUSP00000124470.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162280Re-query CCDS DB by Protein ID:ENSMUSP00000124470
Original member Current member NCBI NM_177763.3 NP_808431.2 Accepted alive Link to Nucleotide Sequence:NM_177763.3Link to Protein Sequence:NP_808431.2Re-query CCDS DB by Nucleotide ID:NM_177763Re-query CCDS DB by Protein ID:NP_808431Link to BLAST:NP_808431.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808431.2 247 Q5U4E0 247 100% 0 0

Chromosomal Locations for CCDS 39591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113171858 113171958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113176446 113176682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113193818 113194223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCTGCCCTCGCAGGAAGCCTCCAAGCTCTACCATGAGCACTACATGCGGAACTCGCGGGCCATCGGCG
TGCTATGGGCCATCTTCACCATCTGCTTCGCCATCATCAACGTGGTGGTCTTCATCCAGCCCTACTGGGT
AGGCGACAGCGTGAGCACTCCCAAGCCTGGCTACTTCGGCCTCTTCCACTACTGCGTGGGCAGCGGGCTA
GCGGGCCGCGAGCTCACCTGCCGGGGCTCTTTCACCGACTTCAGCACCATCCCGTCCAGCGCCTTCAAGG
CGGCCGCCTTCTTCGTGTTGCTTTCCATGGTGCTGATTCTCGGCTGCATCACCTGCTTCGCTCTTTTCTT
CTTCTGCAACACTGCTACTGTCTACAAGATCTGCGCCTGGATGCAGCTCCTGGCAGCCCTGTGCCTCGTC
TTGGGCTGTATGATCTTTCCTGATGGCTGGGATGCTGAGACCATCCGGGACATGTGCGGGGCCAAGACAG
GGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCGTACATTCTGGCCATCATCGGCATCCTCAACGC
GCTCATCCTGTCCTTCCTTGCCTTCGTGCTGGGCAACCGGCAGACGGACCTGCTGCAGGAGGAGCTCAAA
CAGGAGAACAAAGATTTCGTGGGCACTACAGTAAGTTCCGTGCTGCGGCCAGGAGGTGATGTGTCTGGCT
GGGGAGTCCTACCATGCCCTGTTGCTCACACACAGGGACCCTGA

Translation (247 aa):
MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGL
AGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVYKICAWMQLLAALCLV
LGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELK
QENKDFVGTTVSSVLRPGGDVSGWGVLPCPVAHTQGP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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