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Report for CCDS39538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39538.1 Public Mus musculus 6 Pradc1 23 108 98 CCDS HistoryNCBI Gene:73327Re-query CCDS DB by CCDS ID:39538.1Re-query CCDS DB by GeneID:73327See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113770.1 ENSMUSP00000109400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113770.1Link to Ensembl Protein Viewer:ENSMUSP00000109400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113770Re-query CCDS DB by Protein ID:ENSMUSP00000109400
Original member Current member NCBI NM_028505.2 NP_082781.1 Accepted alive Link to Nucleotide Sequence:NM_028505.2Link to Protein Sequence:NP_082781.1Re-query CCDS DB by Nucleotide ID:NM_028505Re-query CCDS DB by Protein ID:NP_082781Link to BLAST:NP_082781.1

Chromosomal Locations for CCDS 39538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85447177 85447297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85447936 85448045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85448491 85448591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85451113 85451179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGAGCCGTGGCGCCGCGGGCTGGTGCTGTCTCGTGCTCTGGCTGCCCACGTGCGTCGCGGCCCACGGCT
TACGCATCCATGACTACTTATACTTCCAAGTGCTGAGTCCTGGGGATATTCGATACATCTTCACAGCCAC
ACCTGCCAAGGACTTTGGTGGGATATTTCACACACGGTATGAGCAGATTCACCTCGTCCCTGCTGAACCT
CCAGAGGCCTGCGGGGAACTCAGCAACGGCTTCTTTATCCAGGACCAGATCGCTCTGGTGGAAAGGGGCT
ACATGATCCGCCGTTCTCTGGAACAGCACGGGCTACCATGGGCCATCATCTCTATCCCAGTCAATGTCAC
CAGTATCCCCACCTTTGAGCTACTGCAACCTCCGTGGACTTTCTGGTAG

Translation (132 aa):
MSRGAAGWCCLVLWLPTCVAAHGLRIHDYLYFQVLSPGDIRYIFTATPAKDFGGIFHTRYEQIHLVPAEP
PEACGELSNGFFIQDQIALVERGYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPPWTFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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