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Report for CCDS39495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39495.1 Public Mus musculus 6 Vmn1r10 23 108 98 CCDS HistoryNCBI Gene:113858Re-query CCDS DB by CCDS ID:39495.1Re-query CCDS DB by GeneID:113858See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176073.2 ENSMUSP00000134901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176073.2Link to Ensembl Protein Viewer:ENSMUSP00000134901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176073Re-query CCDS DB by Protein ID:ENSMUSP00000134901
Original member Current member EBI ENSMUST00000228270.1 ENSMUSP00000154213.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228270.1Link to Ensembl Protein Viewer:ENSMUSP00000154213.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228270Re-query CCDS DB by Protein ID:ENSMUSP00000154213
Original member Current member NCBI NM_053231.2 NP_444461.2 Accepted alive Link to Nucleotide Sequence:NM_053231.2Link to Protein Sequence:NP_444461.2Re-query CCDS DB by Nucleotide ID:NM_053231Re-query CCDS DB by Protein ID:NP_444461Link to BLAST:NP_444461.2

Chromosomal Locations for CCDS 39495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57113425 57114360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGTCTTCATTTAAGAATGTTCTTTATTTCCAAGCTGGACTTGGAGTCCTAGCCAATATGGTTCTTCTTC
TTTTCTATATTTTTATAATCCTAGGTCACAGACCTAAGCCCACAGACCTGATCTCCTGTCAACTGACCTT
TGTTCACATAATAATGGTCCTCACTGGAGGGGATATTTTGCTTACAGACTTATTTGAGTTATTAAACATT
GAGAATGACTTAAAATGTAAGACAATTTTTTATATTAGCAGGGTGATGAGAGGCCTCTCTATCTGCACCA
CCTGTCTTCTGAGTGTGTTCCAGGCTGTCACTATCAGTCCCAATACCTCTTTGATGGCAAAATTTAAACA
AAAACTGAAAAAATACATGGCCTGTGTTTTCTTATGCATTTGGTCTTTCAATTTGGCCTTCAGTACTAAC
CGGATCTTTTATGTTGGTGGTTTTACGAATGTGAGTGAGACCAACCAGATGCAGGTCACTAAATCCTGCT
CACTCTTACCCATGAACATTATTATCAGAGGATTTATTTTTACAATATCAACCTCCAGAGATGTGTTTCT
TGTAGGAGTCATGCTGACCACAAGTGTATACATGGTCATTACCATGTTTAGGTATCACAGGCAGTGCAAG
TATCTTTATAGCATCAGCCACTTGAGAGAGTCCCCTGAGAAAAGGGCCACCCAGACCATCGTGCTGCTGG
TGTCTTTCTTTGTTGTCATGTACTGGGTGGACTTCATCATCTCATTCACCTCAGATATGATATGGATGTA
TGACCCACTCATCCTGACTGTTCAGAAATTTATGATGTATGCCTATCCCACAATTACCCCTTTGGTACAA
ATCAGTTCTGATAACAGAATAATAATTATGCTGAAAAACCTGCAATCAAAACATCAACAGAGATTTTTTA
ATAAAGATATTTTTTTTTCATTATAA

Translation (311 aa):
MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNI
ENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTN
RIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCK
YLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQ
ISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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