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Report for CCDS39412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39412.1 Public Mus musculus 5 Pds5b 23 108 98 CCDS HistoryNCBI Gene:100710Re-query CCDS DB by CCDS ID:39412.1Re-query CCDS DB by GeneID:100710See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016569.10 ENSMUSP00000016569.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016569.10Link to Ensembl Protein Viewer:ENSMUSP00000016569.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000016569Re-query CCDS DB by Protein ID:ENSMUSP00000016569
Original member NCBI NM_175310.6 NP_780519.3 Updated not alive Link to Nucleotide Sequence:NM_175310.6Link to Protein Sequence:NP_780519.3Re-query CCDS DB by Nucleotide ID:NM_175310Re-query CCDS DB by Protein ID:NP_780519
Current member NCBI NM_175310.7 NP_780519.3 Accepted alive Link to Nucleotide Sequence:NM_175310.7Link to Protein Sequence:NP_780519.3Re-query CCDS DB by Nucleotide ID:NM_175310Re-query CCDS DB by Protein ID:NP_780519Link to BLAST:NP_780519.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780519.3 1446 Q4VA53-1 1446 100% 0 0

Chromosomal Locations for CCDS 39412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150716422 150716529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150719823 150720026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150722295 150722381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150722478 150722575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150723245 150723371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150728894 150728974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150736279 150736419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150739201 150739316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150744164 150744258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150746606 150746751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150748096 150748247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150749834 150749947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150754388 150754469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150756382 150756430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150758672 150758811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150761019 150761134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150764901 150765006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150769787 150769947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150775395 150775518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150778153 150778311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150779211 150779279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150780609 150780745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150783019 150783142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150788315 150788519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150790505 150790619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150792114 150792246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150792567 150792686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150793549 150793611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150794268 150794413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150796571 150796670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150800578 150801017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150801122 150801229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150805574 150805712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150807813 150807848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4341 nt):
ATGGCTCATTCAAAGACAAGGACCAACGATGGGAAAATTACTTACCCTCCTGGAGTCAAGGAAATCTCAG
ATAAAATCTCTAAAGAGGAGATGGTGAGGCGGTTAAAGATGGTTGTAAAAACTTTCATGGACATGGACCA
GGACTCTGAAGAGGAAAAGGAACTTTATCTAAACCTAGCTTTACATCTTGCTTCTGACTTCTTCCTCAAG
CATCCTGATAAAGATGTTCGTTTACTGGTGGCTTGCTGCCTTGCTGATATTTTCAGGATTTATGCTCCTG
AGGCTCCTTACACGTCTCCCGATAAACTAAAGGATATATTTATGTTTATAACAAGGCAACTAAAGGGACT
AGAAGATACAAAGAGCCCTCAATTTAATAGGTATTTTTATTTACTTGAGAACATTGCATGGGTTAAATCA
TATAACATATGCTTTGAGTTAGAAGATAGCAATGAAATCTTTACTCAACTTTACAGAACATTATTCTCAG
TTATAAACAATGGCCACAATCAGAAAGTTCATATGCACATGGTGGACCTCATGAGCTCTATCATTTGTGA
AGGTGATACCGTATCTCAGGAGCTCTTAGATACAGTTTTAGTAAATCTGGTACCTGCCCATAAGAACTTA
AACAAGCAAGCATATGATTTGGCAAAGGCTTTGCTGAAGAGGACTGCTCAAGCTATTGAACCATATATTA
CCAATTTTTTTAACCAGGTTCTGATGCTTGGGAAAACATCTATCAGTGATTTGTCTGAGCATGTCTTTGA
TTTGATCTTGGAACTCTACAACATTGACAGCCATTTGCTGCTTTCTGTTCTGCCCCAGCTTGAGTTTAAA
TTAAAGAGCAATGATAATGAAGAACGCCTCCAGGTTGTTAAACTACTGGCGAAAATGTTTGGGGCAAAGG
ATTCAGAATTGGCTTCTCAGAACAAACCCCTCTGGCAGTGCTACCTGGGCAGGTTTAATGATATCCATGT
ACCAATACGCCTGGAATGTGTGAAATTTGCCAGCCACTGCCTCATGAACCATCCTGATTTAGCAAAGGAT
TTAACAGAGTATCTTAAAGTGAGGTCACATGATCCTGAGGAAGCTATTAGACATGATGTTATTGTGTCTA
TAGTAACAGCTGCTAAAAAGGATATTCTTCTTGTCAATGATCACTTACTCAATTTTGTGAGAGAGCGAAC
ATTGGACAAACGGTGGAGAGTACGTAAAGAAGCCATGATGGGACTGGCCCAGATTTATAAGAAATACTCT
TTACAGTCAGCAGCTGGCAAAGATGCTGCAAAACAGATATCCTGGGTCAAGGACAAGCTGCTGCATATAT
ACTATCAGAACAGCATCGACGACCGGCTACTTGTTGAGCGGATCTTTGCTCAGTACATGGTCCCTCACAA
TTTGGAAACGACGGAACGGATGAAGTGCTTGTATTACTTGTACGCTACACTGGACTTGAATGCTGTGAAA
GCATTGAATGAAATGTGGAAATGTCAAAATCTACTCCGACATCAAGTAAAGGATTTACTTGATTTAATTA
AACAACCAAAAACAGATGCCAGTGTCAAGGCCATATTTTCTAAAGTGATGGTTATCACAAGAAATTTGCC
AGATCCTGGTAAGGCCCAAGACTTCATGAAGAAGTTCACACAAGTGTTGGAAGATGATGAGAAAATACGG
AAACAGCTGGAAGCCCTTGTTAGTCCCACATGTTCCTGCAAGCAGGCTGAAGGCTGTGTGCGTGAAATAA
CTAAGAAGTTGGGCAACCCTAAGCAGCCTACAAACCCTTTCTTGGAAATGATCAAGTTTCTCTTGGAGAG
GATAGCTCCTGTACACATAGACACTGAATCCATCAGTGCTCTTATCAAGCAAGTGAATAAATCAATAGAT
GGAACAGCAGATGATGAGGATGAGGGTGTTCCAACTGATCAAGCTATCAGGGCAGGCCTTGAGCTGCTGA
AGGTGCTGTCTTTTACGCACCCTATCTCCTTTCACTCTGCTGAGACGTTTGAGTCCCTTCTGGCTTGTCT
GAAGATGGATGATGAGAAGGTGGCAGAAGCTGCACTACAAATTTTCAAAAACACAGGAAGCAAAATTGAA
GAGGATTTCCCTCACATCAGATCAGCCTTGCTTCCTGTACTACATCACAAATCCAAAAAAGGACCACCTC
GGCAGGCCAAATACGCCATCCATTGTATTCATGCCATATTTTCTAGTAAAGAAACCCAGTTTGCACAGAT
ATTTGAGCCTCTGCATAAAAGCCTAGATCCAAGCAACCTGGAGCATCTTATAACCCCTCTGGTCACTATT
GGTCATATTGCTCTTCTCGCACCTGATCAGTTCGCTGCTCCTCTGAAGTCTTTGGTGGCAACTTTCATTG
TGAAGGACCTCCTCATGAATGACCGGCTTCCAGGAAAAAAGACAACTAAGCTTTGGGTTCCAGATGAGGA
AGTCTCACCTGAGACAATGGTCAAAATTCAGGCTATTAAAATGATGGTTCGATGGCTACTTGGAATGAAG
AATAATCACAGTAAGTCAGGAACTTCCACCCTCAGATTACTAACAACGATACTGCATAGTGATGGGGATT
TGACAGAACAAGGGAAAATTAGTAAACCAGATATGTCACGCCTGAGACTTGCTGCTGGGAGTGCTATTGT
GAAGCTGGCACAGGAGCCCTGTTACCACGAGATCATTACACTGGAGCAGTACCAGCTGTGTGCATTAGCC
ATCAATGATGAGTGTTATCAAGTCAGGCAGGTGTTCGCTCAGAAACTTCACAAAGGCCTTTCCCGCTTAC
GGCTTCCCCTTGAGTACATGGCCATCTGTGCTCTTTGTGCCAAAGACCCTGTGAAAGAGAGGCGAGCCCA
TGCTAGACAGTGCTTGGTGAAGAACATCACTGTGAGGAGGGAGTACCTGAAGCAGCATGCAGCTGTTAGT
GAAAAATTATTGTCTCTTCTACCAGAGTATGTTGTTCCATATACAATTCACCTTTTGGCACATGACCCAG
ATTATGTCAAAGTACAGGATATTGAACAACTTAAAGATGTGAAAGAATGCCTTTGGTTTGTTCTGGAGAT
ATTGATGGCTAAAAATGAAAACAACAGCCATGCATTTATCAGAAAAATGGTAGAAAATATTAAACAGACA
AAAGATGCTCAAGGACCAGATGATACAAAAATGAATGAAAAATTGTACACCGTGTGTGATGTTGCCATGA
ACATCATCATGTCCAAGAGCACCACGTACAGCCTGGAGTCTCCTAAGGACCCCGTGCTGCCAGCTCGGTT
TTTCACCCAGCCTGACAAGAATTTTAGTAACACCAAAAATTACCTGCCTCCAGAAATGAAATCATTTTTC
ACTCCTGGAAAACCTAAAACAGCCAATGTTCTCGGAGCAGTTAATAAGCCACTTTCATCAGCAGGCAAAC
AGTCTCAGACCAAATCATCAAGAATGGAAACTGTGAGCAACGCAAGCAGCAGCTCCAACCCAAGCTCTCC
TGGAAGGATCAAGGGGAGGCTTGATAGCTCTGAAATGGATCACAGTGAAAATGAAGATTATACAATGTCT
TCACCTTTGCCAGGAAAAAAAAGTGACAAGAGAGAAGACCCTGATCTTTCTGAGTTGGAGAAGCCTAGAA
GTCGGAAAAAAGCACCTGTCACAGACCCTGAAGAGAAATTAGGTATGGATGACCTAACTAAGTTGGTACA
GGAACAGAAACCTAAAGGCAGTCAGCGAGGCCGGAAAAGAGGCCGTACAGCTTCAGACTCAGACGAGCAG
CAGTGGCCTGAGGAGAAGAGGCACAAAGAGGAGCTCCTGGAAAATGAGGATGAGCAGAACAGCCCACCAA
AAAAGGGCAAAAGAGGCAGGCCACCAAAACCTCTTGGTGGGGGGACATCGAAGGAAGAGCCCACAATGAA
AACATCCAAGAAAGGAAACAAGAAAAAACTTGTACCTCCTGTAGTAGACGACGATGAAGAAGAAGAAAGA
CAAATTGGAAACACAGAACATAAGTCAAAAAGCAAACAGCACCGCACATCAAAGAGAGCACAACAGAGAG
CAGAATCTCCTGAAACAAGTGCAGTTGAATCCACACAGTCCACACCACAGAAAGGACGAGGAAGACCATC
AAAAGCACCATCACCATCACAACCCCCCAAAAAAATCCGTGTAGGACGCTCCAAACAGGTAGCCACTAAA
GAAAACGATTCAAGTGAAGAAATGGATGTGCTTCAGGCCAGCTCTCCTGTCAGTGACGACACTACACAGG
AAGGAGCAGAAGAGGAGGACATTTCTGTGGGAAATGTACGACGGCGAAGCTCCAAACGAGAGAGACGATG
A

Translation (1446 aa):
MAHSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALHLASDFFLK
HPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKS
YNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNL
NKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQLEFK
LKSNDNEERLQVVKLLAKMFGAKDSELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAKD
LTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYS
LQSAAGKDAAKQISWVKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVK
ALNEMWKCQNLLRHQVKDLLDLIKQPKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVLEDDEKIR
KQLEALVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSID
GTADDEDEGVPTDQAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIE
EDFPHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSKETQFAQIFEPLHKSLDPSNLEHLITPLVTI
GHIALLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETMVKIQAIKMMVRWLLGMK
NNHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLEQYQLCALA
INDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNITVRREYLKQHAAVS
EKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEILMAKNENNSHAFIRKMVENIKQT
KDAQGPDDTKMNEKLYTVCDVAMNIIMSKSTTYSLESPKDPVLPARFFTQPDKNFSNTKNYLPPEMKSFF
TPGKPKTANVLGAVNKPLSSAGKQSQTKSSRMETVSNASSSSNPSSPGRIKGRLDSSEMDHSENEDYTMS
SPLPGKKSDKREDPDLSELEKPRSRKKAPVTDPEEKLGMDDLTKLVQEQKPKGSQRGRKRGRTASDSDEQ
QWPEEKRHKEELLENEDEQNSPPKKGKRGRPPKPLGGGTSKEEPTMKTSKKGNKKKLVPPVVDDDEEEER
QIGNTEHKSKSKQHRTSKRAQQRAESPETSAVESTQSTPQKGRGRPSKAPSPSQPPKKIRVGRSKQVATK
ENDSSEEMDVLQASSPVSDDTTQEGAEEEDISVGNVRRRSSKRERR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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