NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39410.1 Public Mus musculus 5 B3glct 23 108 98 CCDS HistoryNCBI Gene:381694Re-query CCDS DB by CCDS ID:39410.1Re-query CCDS DB by GeneID:381694See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100404.5 ENSMUSP00000097972.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100404.5Link to Ensembl Protein Viewer:ENSMUSP00000097972.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100404Re-query CCDS DB by Protein ID:ENSMUSP00000097972
Original member Current member NCBI NM_001081204.2 NP_001074673.1 Accepted alive Link to Nucleotide Sequence:NM_001081204.2Link to Protein Sequence:NP_001074673.1Re-query CCDS DB by Nucleotide ID:NM_001081204Re-query CCDS DB by Protein ID:NP_001074673Link to BLAST:NP_001074673.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074673.1 489 Q8BHT6-1 489 100% 0 0

Chromosomal Locations for CCDS 39410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149678337 149678379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149696425 149696474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149703279 149703318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149709320 149709429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149725411 149725487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149726754 149726865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149729924 149730060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149732673 149732736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149735370 149735489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149739532 149739601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149745426 149745539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149746505 149746604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149750431 149750550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149754065 149754209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149759439 149759606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGCGGCCTCCCGCGCTGCTGGCGCTGTTCAGCTGCTCCGCGGCTTTTGCTTTGATGTCTGAAGAGATAA
AAGAAAAGGTCACGCCTTCTCAGGATTTGAGGCAGAGTAGTCTACCGGGGAGACATGACATAGACTTAAA
AGAAATCGTGTTTGTCATCCAGAGTCAAAGTAATTCCTTTCATGCCAAGAGAGCAGAACAGTTGAAAAAA
AACATCTTAAAGCAGGCTGCAAATCTGACACAGGATCTCCCTAGAGTCCTCCTTCTCCATCAGTTGGCAA
AGCAGGAAGGTGCTTGGACCATCCTTCCCTTGTTACCGCACTTTTCTGTAACATACAGCAAGAATTCAGC
GTGGATTTTCTTCTGTGAAGAAGAGACGAGACTACAAATCCCCAGACTCCTAGACACACTCAGACGATAT
GACCCATCTAAGGAATGGTTTTTAGGAAAAGCACTGTATGACGAAGAGTCGACGATCATCCACCATTACG
CCTTCTCTGAGAACCCAACAGTCTTTAAATATCCCGACTTCGCTGCTGGCTGGGCCCTTAGCATCCCGCT
GGTGAACAAGCTTGCCAAAAGATTAAAGAGTGAGGCGCTGAAGTCTGACTTCACAATTGATTTAAAGCAC
GAGATTGCCCTCTACATCTGGGACAAAGGTGGAGGACCGGCCCTCACCCCTGTGCCTGAGTTTTGTACAG
AAGATGTGGACCCCCGCTGCGTCACCACGTTCCATTCTTTCCTACCGCTCTGTGGAGTACCGGTAAAGAA
GGAGGAGATTTTTGTTGCAGTGAAAACGTGCAAGAAATTTCATGCTGACAGAATACCCATCGTAAAGAAG
ACATGGGCGGCACAGGCTAGCCTTATCGAATACTACAGTGACTATGCAGAAACCGCCATCCCCACGGTGG
ATTTGGGAATTCCCAATACAGACAGGGGTCATTGTGGAAAAACCTTTGCCATTTTGGAAAAATTTTTGAA
TCACAGTCACAACAAAATCTCATGGTTAGTCATTGTGGACGATGACACATTAATCAGCATCTCCAGGCTC
CGACACCTGCTTAGCTGCTATGACTCCAGCGACCCTGTGTTTCTGGGAGAGCGCTATGGCTACGGCCTAG
GCACAGGCGGCTACAGCTATGTCACAGGAGGAGGCGGGATGGTCTTTAGCAGGGAAGCCATCCGGAGACT
TCTCGTGAGCAGCTGCAGATGCTACAGCAATGACGCTCCGGACGACATGGTTCTGGGCATGTGCTTCAGT
GGGCTGGGGGTCCCCGTGACACACAGCCCCCTCTTCCATCAGGCTCGGCCAGTAGATTACCCCAAGGACT
ACCTCGCCCATCAGATTCCAGTATCATTTCACAAACACTGGCACATTGACCCGGTAAAGGTGTACCTCAC
GTGGCTGGCACCCAGTGAGGAAGACCAAGCCACGCAGGAGACACAGAAGGACCCAAGAGAAGAATTATAG

Translation (489 aa):
MRPPALLALFSCSAAFALMSEEIKEKVTPSQDLRQSSLPGRHDIDLKEIVFVIQSQSNSFHAKRAEQLKK
NILKQAANLTQDLPRVLLLHQLAKQEGAWTILPLLPHFSVTYSKNSAWIFFCEEETRLQIPRLLDTLRRY
DPSKEWFLGKALYDEESTIIHHYAFSENPTVFKYPDFAAGWALSIPLVNKLAKRLKSEALKSDFTIDLKH
EIALYIWDKGGGPALTPVPEFCTEDVDPRCVTTFHSFLPLCGVPVKKEEIFVAVKTCKKFHADRIPIVKK
TWAAQASLIEYYSDYAETAIPTVDLGIPNTDRGHCGKTFAILEKFLNHSHNKISWLVIVDDDTLISISRL
RHLLSCYDSSDPVFLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLVSSCRCYSNDAPDDMVLGMCFS
GLGVPVTHSPLFHQARPVDYPKDYLAHQIPVSFHKHWHIDPVKVYLTWLAPSEEDQATQETQKDPREEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH