NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39358.1 Public Mus musculus 5 Iqce 23 108 98 CCDS HistoryNCBI Gene:74239Re-query CCDS DB by CCDS ID:39358.1Re-query CCDS DB by GeneID:74239See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041783.13 ENSMUSP00000045913.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041783.13Link to Ensembl Protein Viewer:ENSMUSP00000045913.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041783Re-query CCDS DB by Protein ID:ENSMUSP00000045913
Original member Current member NCBI NM_028833.3 NP_083109.2 Accepted alive Link to Nucleotide Sequence:NM_028833.3Link to Protein Sequence:NP_083109.2Re-query CCDS DB by Nucleotide ID:NM_028833Re-query CCDS DB by Protein ID:NP_083109Link to BLAST:NP_083109.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083109.2 778 Q6PCQ0-1 778 100% 0 0

Chromosomal Locations for CCDS 39358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140665366 140665493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140666008 140666208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140670467 140670567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140671344 140671465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140671807 140671926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140674337 140674360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140675078 140675248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140677416 140677506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140678074 140678178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140680716 140680945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140682402 140682457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140683376 140683539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140686045 140686094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140686328 140686400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140687785 140687855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140689813 140689863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140689956 140690069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140691600 140691670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140692794 140692928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140693415 140693543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140697008 140697053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140699685 140699732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140702182 140702217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGAGCCTGGGCACCACAGATATAGCCTCGGAGACGGGAGATGACAGTCTGTCTGCTATTACCTTTGAAT
CTGACATTGAGTCGAAAACAAAAAGGAAAAGTTTCCACAAACCTCCTTCCACATCACCAAAGTCGCCCTA
CTACTCCAAACCCAGAAAAGTGACCTCCTGGCGATCTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGC
AGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGATCCTCGAAACAGGGTAGTGTGGCCCAACCCCCGA
GCCCCACGCTTACCTCGGAGCACGCGTGGACCCACCCCCCCAGCTGCACTCCCGACTACCTGACAGAAGC
CGTGAGAGCGAAGAGGGCAGACCTCAGGCGTTCTGGCAGCCATGGTCACGTCTCTGGGACTTCCGTCTAC
AGAGAGAAGGAGGACATGTACGACGAGATCATCGAGTTGAAGAAGTCCTTACATATGCAGAAAAGTGATG
TGGATCTGATGAGAACAAAGCTTCGGCGCTTGGAAGAGGAGAACAGCAGAAAGGATCGGCAGATAGAACA
GCTTCTGGATCCAAGTCGAGGCCCAGACTTCGTGCGAACCTTGGCAGAGAAGAAGCCTGACACGGGCTGG
GTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACACTATCA
ACAAACTGCAGACGGACATGAAGACCACCAACCTGGAGGAGATGCGCATTGCCATGGAAACATACTACGA
AGAGATCCATCGTCTGCAGACCCTCCTGGCGAGTTCTGAAGCCACAGGAAAGAAGCCCATGGTGGAGAAG
AAACTGGGTGTGAAGAGGCAGAAGAAGATGAGCAGTGCCCTGCTGAACCTAACACGGAGTGTGCAGGAGC
TGACCGAGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATCTCCAA
AATAAAGGGTTACGGGGACTGGAGCAAGCCCCGGCTGCTGAGACGCATCGCAGAGCTAGAAAAGAAAGTG
AGTTCCTCAGAAAGCCCAAAGCAATCGACTTCAGAGCTGGTGAATCCGAATCCCCTGGTCCGCTCCCCAT
CCAACATCTCAGTGCAAAAGCAGCCGAAAGGGGACCAGTCCCCAGAGGACCTGCCCAAGGTGGCCCCGTG
TGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGCACTGCAGGAGCAG
CTGCTGGAGAAAGACCTGGAGATGAAGCAGCTGCTACAGTCCAAGATCGACCTGGAGAAGGAGTTGGAGA
CAGCCAGGGAAGGCGAGAAGGGGAGGCAGGAGCAGGAGCAGGCTTTGAGGGAGGAAGTTGAAGCACTCAC
CAAAAAATGTCAAGAACTGGAAGAAGCTAAGAGAGAAGAGAAAAACTCCTTCGTAGCAGTGACTCATGAG
GCTCATCCAGAGCTCCATGCCCCCTCGCCCTGCAGCAGGCACTCCGAGCCAGACTCTGACAATAGTGCTG
GTGAGGAGGGTAGCTCCCAACCCCCTGCCCCATGCTCTGAAGAGAGGAGAGAGGCTGCCATTAGGACCCT
GCAGGCGCAGTGGAAGGCCCACAGGCGCAAGAAAAGAGAAGCAGCTCTGGATGAGGCAGCGACTGTGCTC
CAGGCAGCCTTCAGGGGACACCTAGCTCGTTCGAAGCTTGTACGCAGCAAAGTCCCAGACTCCAGGTCTC
CCAGCCTGCCGGGCCTTCTCAGCCCTCTTAACCAGAGTTCTCCTGCGCCCCGTGTCCTAAGCCCCATCTC
CCCGGCTGAAGAGAACCCAACACAAGAGGAGGCTGTCATCGTTATCCAGTCCATCCTCCGTGGATACCTG
GCCCAGGCCAGGTTCATTGCCAGCTGCTGTCGAGAGATTGCGGCGTCCTCTCAGAGGGAAACTGTTTCAT
TGACACCCTCAGGATCTGCCTCCCCACCCTCCCTCAGAGCTTCTCCCGGAGTGATCCGCAAGGAGCTCTG
TGCCTCGGAGGAGCTGAGGGAGACCTCTGCATCTGAACCTGCCCCCTCCGTCCCCTACTCCGCCCAAGGT
GGCCACGGGGACTGCCCGTCCTCATCCAGTCTGGAGGCTGTGCCCAGTATGAAGGATGCCATGTGTGAGG
AAAGGAGCAGCAGCCCTAGAAGCGCAGGGCCATCCTTGGCTGAGCCCTCTCCCCCAGAACTGCAGCCCTT
GTCACCACCACCTGTGGAGGACATCTGCTCGGATGACTCAGATGACATTATCTTTTCGCCATTTCTGCCC
AGGAAGAAAAGCCCCTCCCCGTTCTAA

Translation (778 aa):
MSLGTTDIASETGDDSLSAITFESDIESKTKRKSFHKPPSTSPKSPYYSKPRKVTSWRSLKTAGSMPLSS
RMSLTPQKLWLGSSKQGSVAQPPSPTLTSEHAWTHPPSCTPDYLTEAVRAKRADLRRSGSHGHVSGTSVY
REKEDMYDEIIELKKSLHMQKSDVDLMRTKLRRLEEENSRKDRQIEQLLDPSRGPDFVRTLAEKKPDTGW
VITGLKQRIFRLEQQCKEKDNTINKLQTDMKTTNLEEMRIAMETYYEEIHRLQTLLASSEATGKKPMVEK
KLGVKRQKKMSSALLNLTRSVQELTEENQSLKEDLDRMLSNSPTISKIKGYGDWSKPRLLRRIAELEKKV
SSSESPKQSTSELVNPNPLVRSPSNISVQKQPKGDQSPEDLPKVAPCEEQEHLQGTVKSLREELGALQEQ
LLEKDLEMKQLLQSKIDLEKELETAREGEKGRQEQEQALREEVEALTKKCQELEEAKREEKNSFVAVTHE
AHPELHAPSPCSRHSEPDSDNSAGEEGSSQPPAPCSEERREAAIRTLQAQWKAHRRKKREAALDEAATVL
QAAFRGHLARSKLVRSKVPDSRSPSLPGLLSPLNQSSPAPRVLSPISPAEENPTQEEAVIVIQSILRGYL
AQARFIASCCREIAASSQRETVSLTPSGSASPPSLRASPGVIRKELCASEELRETSASEPAPSVPYSAQG
GHGDCPSSSSLEAVPSMKDAMCEERSSSPRSAGPSLAEPSPPELQPLSPPPVEDICSDDSDDIIFSPFLP
RKKSPSPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH