NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39261.1 Public Mus musculus 5 Orai1 23 108 98 CCDS HistoryNCBI Gene:109305Re-query CCDS DB by CCDS ID:39261.1Re-query CCDS DB by GeneID:109305See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051016.4 ENSMUSP00000058169.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051016.4Link to Ensembl Protein Viewer:ENSMUSP00000058169.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051016Re-query CCDS DB by Protein ID:ENSMUSP00000058169
Original member Current member EBI ENSMUST00000121652.7 ENSMUSP00000113097.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121652.7Link to Ensembl Protein Viewer:ENSMUSP00000113097.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121652Re-query CCDS DB by Protein ID:ENSMUSP00000113097
Original member Current member NCBI NM_175423.3 NP_780632.1 Accepted alive Link to Nucleotide Sequence:NM_175423.3Link to Protein Sequence:NP_780632.1Re-query CCDS DB by Nucleotide ID:NM_175423Re-query CCDS DB by Protein ID:NP_780632Link to BLAST:NP_780632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780632.1 304 Q8BWG9 304 100% 0 0

Chromosomal Locations for CCDS 39261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123015258 123015566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123029075 123029680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGCATCCGGAGCCTGCCCCGCCCCCGAGTCACAGCAATCCGGAGCTTCCCGTGAGCGGCGGCAGCAGCA
CTAGCGGCAGCCGCCGGAGCCGCCGCCGCAGCGGGGACGGGGAGCCCTCGGGGGCCCCACCGCTGCCGCC
GCCGCCACCCGCCGTCAGCTACCCGGACTGGATCGGCCAGAGTTACTCCGAGGTGATGAGCCTCAACGAG
CACTCGATGCAGGCGCTGTCCTGGCGCAAGCTCTACTTAAGCCGCGCCAAGCTCAAAGCTTCCAGCCGGA
CCTCGGCTCTGCTCTCCGGCTTCGCCATGGTAGCGATGGTGGAAGTCCAGCTGGACACAGACCATGACTA
CCCACCAGGGTTGCTCATCGTCTTTAGTGCCTGCACCACAGTGCTAGTGGCCGTGCACCTGTTTGCCCTC
ATGATCAGCACCTGCATCCTGCCCAACATCGAGGCTGTGAGCAACGTCCACAACCTCAACTCGGTCAAAG
AGTCACCCCACGAGCGCATGCATCGCCACATCGAGCTGGCCTGGGCCTTCTCCACGGTCATCGGGACGCT
GCTTTTCCTAGCAGAGGTCGTGCTGCTCTGCTGGGTCAAGTTCTTACCTCTCAAGAGGCAAGCGGGACAG
CCAAGCCCCACCAAGCCTCCCGCTGAATCAGTCATCGTCGCCAACCACAGCGACAGCAGCGGCATCACCC
CGGGTGAGGCGGCAGCCATTGCCTCCACCGCCATCATGGTTCCCTGTGGCCTGGTTTTTATCGTCTTTGC
TGTTCACTTCTACCGCTCCCTGGTCAGCCATAAGACGGACCGGCAGTTCCAGGAGCTCAATGAGCTGGCC
GAGTTTGCCCGCTTGCAGGACCAGCTGGACCACAGAGGGGACCATTCTCTAACACCGGGCACCCACTATG
CCTAA

Translation (304 aa):
MHPEPAPPPSHSNPELPVSGGSSTSGSRRSRRRSGDGEPSGAPPLPPPPPAVSYPDWIGQSYSEVMSLNE
HSMQALSWRKLYLSRAKLKASSRTSALLSGFAMVAMVEVQLDTDHDYPPGLLIVFSACTTVLVAVHLFAL
MISTCILPNIEAVSNVHNLNSVKESPHERMHRHIELAWAFSTVIGTLLFLAEVVLLCWVKFLPLKRQAGQ
PSPTKPPAESVIVANHSDSSGITPGEAAAIASTAIMVPCGLVFIVFAVHFYRSLVSHKTDRQFQELNELA
EFARLQDQLDHRGDHSLTPGTHYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH