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Report for CCDS39117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39117.1 Public Mus musculus 5 Exoc1 23 108 98 CCDS HistoryNCBI Gene:69940Re-query CCDS DB by CCDS ID:39117.1Re-query CCDS DB by GeneID:69940See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113493.7 ENSMUSP00000109121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113493.7Link to Ensembl Protein Viewer:ENSMUSP00000109121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113493Re-query CCDS DB by Protein ID:ENSMUSP00000109121
Original member NCBI NM_027270.2 NP_081546.1 Updated not alive Link to Nucleotide Sequence:NM_027270.2Link to Protein Sequence:NP_081546.1Re-query CCDS DB by Nucleotide ID:NM_027270Re-query CCDS DB by Protein ID:NP_081546
Current member NCBI NM_027270.3 NP_081546.1 Accepted alive Link to Nucleotide Sequence:NM_027270.3Link to Protein Sequence:NP_081546.1Re-query CCDS DB by Nucleotide ID:NM_027270Re-query CCDS DB by Protein ID:NP_081546Link to BLAST:NP_081546.1

Chromosomal Locations for CCDS 39117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76532765 76532888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76535554 76535684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76537698 76537857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76540747 76540767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76542051 76542238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76543455 76543682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76543878 76544010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76545254 76545363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76549452 76549601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76554100 76554205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76557819 76557863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76559004 76559167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76559718 76559825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76560330 76560406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76561292 76561520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76563230 76563413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76566957 76567156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76567967 76568161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76569618 76569770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2706 nt):
ATGACAGCAATCAAGCATGCGCTGCAGAGAGATATCTTCACACCAAATGATGAACGCCTGCTGAGCATCG
TGAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACTGTTTTCTGTGTGCCACAGTGACCACTGAACGCCC
CGTGCAGGTGAAGGTGGTCAAAGTCAAGAAATCCGACAAGGGAGATTTCTACAAAAGGCAGATTGCTTGG
GCCCTGCGAGACCTTGCTGTGGTCGACGCCAAAGATGCCATCAAAGAAAACCCGGAATTTGATTTGCATT
TTGAGAAGGTCTATAAGTGGGTGGCCAGCAGCACGGCTGAGAAGAACGCCTTCATCTCCTGCATTTGGAA
GCTGAACCAGCGCTACCTGCGCAAGAAAATCGACTTTGTTAATGTTAGCTCGCAGCTTTTGGAAGAACTG
CCTAAAGTTACAGAAGAATCTGTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGGGGATGAAGAAGCGG
TAGATGAGTACCAAGAGTTAAATGCAAGAGAAGAGCAGGACATCGAGATAATGATGGAAGGCTGCGAGTG
CGCCATTTCTAACGCTGAAGCCTTTGCGGAGAAGTTGTCCCGGGAGCTGCAGGTGCTCGATGGGGCCAAC
ATTCAGTCAATCATGGCCTCTGAGAAACAAGTGAACACCCTGATGCAGTTGCTGGATGAGGCGCTAACGG
AGGTGGACCAGATTGAACTGAAACTGAGCAGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAGATGGA
TCAGATCTCTGAGAGCAACCACCTGATCCATCTCAGCAACACGAATAATGTGAAGCTCCTGTCCGAGATA
GAGTTCCTCGTGAACCACATGGACTTGGCCAAAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGTTT
CTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCG
CCCAGGCCATGACATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCGCTTCAGTGACCTGAGGGAACATTTC
GCCCGGAGACTGGCCAGCCATCTCAACAATGTTTTTGTTCAACAGGGTCATGATCAGAGTTCAACTCTTG
CTCAGCACTCTGTTGAACTGACTCTACCCAATCACCATCCATTTCATAGAGACTTGCTCCGCTATGCCAA
GCTGATGGAGTGGCTAAAGAGTACAGACTATGGAAAATACGAGGGACTAACAAAGAATTACATGGATTAT
TTATCCCGACTATATGAAAGAGAAATCAAAGATTTCTTTGAAGTTGCAAAGATGAAGATGACTGGCACCT
CTAAAGAAAGCAAGAAGTTTGCTACACTGCCTCGAAAAGAAAGTGCTGTCAAGCAGGAAACAGAGAGTCT
CCATGGAAGCTCTGGGAAACTCACTGGATCAACTTCTAGTCTGAATAAACTCAGTGTTCAGAGCTCGGGC
AGTCGCAGGTCCCAGTCGTCCTCCCTACTGGACATGGGGAACATGTCTGCCTCTGACCTCGATGTGGCTG
ACAGAACCAAGTTTGATAAGATCTTTGAACAGGTGCTGAGTGAACTGGAGCCACTGTGTCTGGCAGAACA
GGACTTCATAAGTAAATTTTTCAAACTACAGCAGCATCAAAACATGTCTGCATCAATGACTGAAGCAGAA
GACCTGGATGGAGGCTCGTTATTACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTTCCTCTGAAAAAG
ATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCTAATTGCATT
AGGAGACAAAGTAGATAGCTTTAACTCCCTGTACATGCTGGTCAAAATGAGTCACCACGTGTGGACCGCA
CAGAACGTGGACCCAGCATCTTTTCTAAGTACTACATTAGGAAACGTTTTGGTGACTGTGAAGAGGAACT
TTGACAAATGCATTAGTAACCAAATAAGACAAATGGAAGAAGTAAAGATCTCAAAGAAAAGTAAAGTAGG
AATTCTTCCATTTGTTGCTGAATTTGAAGAATTTGCTGGGCTCGCAGAATCAATTTTCAAAAATGCTGAA
CGCCGTGGCGATCTGGACAAAGCATACACCAAATTAATCAGAGGAGTGTTCATTAATGTGGAGAAAGTAG
CAAATGAGAGCCAGAAGACGCCCAGGGATGTGGTCATGATGGAGAACTTTCACCATATTTTTGCAACACT
TTCTCGTCTGAAAATCTCATGTCTTGAAGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGGATCACCTT
CAGTCCTACGTCATTTACTCTTTAGGACAGCCCCTTGAAAAGCTAAATCATTTCTTTGAAGGCGTTGAAG
CTCGAGTAGCCCAGGGCATTCGGGAGGAGGAGGTGAGCTACCAGCTTGCGTTCAACAAGCAAGAGCTTCG
CAAAGTCATTAAAGAGTATCCAGGCAAGGAGGTGAAGAAGGGCCTGGACAACCTCTACAAGAAGGTAGAC
AAGCACCTGTGTGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGAGTTTATACGCC
AGTACAAGCACTTCGAGGGGTTGATAGCGCGCTGCTACCCTGGATCTGGAGTTACGATGGAATTCACTAT
TCAGGACATTCTGGATTATTGCTCCAGCATCGCACAGTCCCACTAA

Translation (901 aa):
MTAIKHALQRDIFTPNDERLLSIVNVCKAGKKKKNCFLCATVTTERPVQVKVVKVKKSDKGDFYKRQIAW
ALRDLAVVDAKDAIKENPEFDLHFEKVYKWVASSTAEKNAFISCIWKLNQRYLRKKIDFVNVSSQLLEEL
PKVTEESVPSGENQSVAGGDEEAVDEYQELNAREEQDIEIMMEGCECAISNAEAFAEKLSRELQVLDGAN
IQSIMASEKQVNTLMQLLDEALTEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKLLSEI
EFLVNHMDLAKGHIKALQEGDLVSSRGIEACTNAADALLQCMNVALRPGHDMLLAVKQQQQRFSDLREHF
ARRLASHLNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLKSTDYGKYEGLTKNYMDY
LSRLYEREIKDFFEVAKMKMTGTSKESKKFATLPRKESAVKQETESLHGSSGKLTGSTSSLNKLSVQSSG
SRRSQSSSLLDMGNMSASDLDVADRTKFDKIFEQVLSELEPLCLAEQDFISKFFKLQQHQNMSASMTEAE
DLDGGSLLRQHSSGTLLPVSSEKDMIRQMMIKIFRCIEPELNNLIALGDKVDSFNSLYMLVKMSHHVWTA
QNVDPASFLSTTLGNVLVTVKRNFDKCISNQIRQMEEVKISKKSKVGILPFVAEFEEFAGLAESIFKNAE
RRGDLDKAYTKLIRGVFINVEKVANESQKTPRDVVMMENFHHIFATLSRLKISCLEAEKKEAKQKYTDHL
QSYVIYSLGQPLEKLNHFFEGVEARVAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKVD
KHLCEEENLLQVVWHSMQDEFIRQYKHFEGLIARCYPGSGVTMEFTIQDILDYCSSIAQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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